Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_022768`
Query reference	OH1004
Location	Chr05:8564575-8573647 (-)
Description	Similar to CCD7: Carotenoid cleavage dioxygenase 7%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_022768 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 21 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g44990`	Involved in strigolactones biosynthesis by cleaving asymmetrically a variety of linear and cyclic carotenoids at the 9-10 double bond.	MAX3/CCD7 is a carotenoid cleavage dioxygenase required for the synthesis of a novel plant signaling molecule.2004 · DOI: 10.1016/j.cub.2004.06.061 Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates the divergent roles of this multifunctional enzyme family.2006 · DOI: 10.1111/j.1365-313x.2006.02666.x
`At3g24220`	Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage activity.	Functional analysis of Arabidopsis NCED6 and NCED9 genes indicates that ABA synthesized in the endosperm is involved in the induction of seed dormancy.2006 · DOI: 10.1111/j.1365-313x.2005.02622.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0550600`	Involved in strigolactones biosynthesis by cleaving asymmetrically a variety of linear and cyclic carotenoids at the 9-10 double bond.	The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds.2006 · DOI: 10.1111/j.1365-313x.2006.02916.x

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009635	response to herbicide	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=94.814; evalue=0.0; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009639	response to red or far red light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=22.342; coverage=89.951; evalue=1.97e-19; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009688	abscisic acid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=22.342; coverage=89.951; evalue=1.97e-19; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009733	response to auxin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.571; coverage=90.762; evalue=0.0; UniProt GO evidence=IMP:Gramene	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009926	auxin polar transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=94.814; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010114	response to red light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=22.342; coverage=89.951; evalue=1.97e-19; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010223	secondary shoot formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=94.814; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016121	carotene catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=94.814; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016124	xanthophyll catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=94.814; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901601	strigolactone biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=94.814; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=94.814; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009535	chloroplast thylakoid membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=22.342; coverage=89.951; evalue=1.97e-19; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009536	plastid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=94.814; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=94.814; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004497	monooxygenase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.237; coverage=90.276; evalue=1.07e-19; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010436	carotenoid dioxygenase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.839; coverage=86.548; evalue=7.15e-37; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=94.814; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045549	9-cis-epoxycarotenoid dioxygenase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=94.814; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046872	metal ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=94.814; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0102162	all-trans-8'-apo-beta-carotenal 15,15'-oxygenase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.839; coverage=86.548; evalue=7.15e-37; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0102395	9-cis-beta-carotene 9',10'-cleavage oxygenase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=94.814; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ag:ACP17973	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.237; coverage=90.276; evalue=1.07e-19	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G44990	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=94.814; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G24220	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=22.342; coverage=89.951; evalue=1.97e-19	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os04g0550600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.571; coverage=90.762; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	syn:sll1541	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.839; coverage=86.548; evalue=7.15e-37	UniProtKB/Swiss-Prot DAT 2026 current_release