Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_022737 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:7231999-7235125 (+) |
| Description | Similar to CRR4: Pentatricopeptide repeat-containing protein At2g45350%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_022737 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 9 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g45350 |
Plays a major role in chloroplast RNA editing. | |
At2g35030 |
Pentatricopeptide repeat-containing protein At2g35030, mitochondrial. | No verified direct reference in this release |
At4g02750 |
Pentatricopeptide repeat-containing protein At4g02750. | No verified direct reference in this release |
At1g09410 |
Pentatricopeptide repeat-containing protein At1g09410, mitochondrial. | No verified direct reference in this release |
At5g46460 |
Pentatricopeptide repeat-containing protein At5g46460, mitochondrial. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.522; coverage=74.595; evalue=3.31e-50; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009451 | RNA modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.895; coverage=102.703; evalue=2.27e-34; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016556 | mRNA modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.522; coverage=74.595; evalue=3.31e-50; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0099402 | plant organ development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.895; coverage=102.703; evalue=2.27e-34; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900865 | chloroplast RNA modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.522; coverage=74.595; evalue=3.31e-50; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.895; coverage=102.703; evalue=2.27e-34; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005773 | vacuole | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.522; coverage=74.595; evalue=3.31e-50; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.522; coverage=74.595; evalue=3.31e-50; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.522; coverage=74.595; evalue=3.31e-50; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G35030 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.895; coverage=102.703; evalue=2.27e-34 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G45350 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.522; coverage=74.595; evalue=3.31e-50 | UniProtKB/Swiss-Prot DAT 2026 current_release |