Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_022502`
Query reference	OH1004
Location	Chr04:151684598-151688285 (-)
Description	Similar to RDR1: RNA-dependent RNA polymerase 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_022502 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 29 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g14790`	RNA-dependent direct polymerase involved in antiviral silencing.	Analysis of the involvement of an inducible Arabidopsis RNA-dependent RNA polymerase in antiviral defense.2003 · DOI: 10.1094/mpmi.2003.16.3.206 Small RNA deep sequencing reveals role for Arabidopsis thaliana RNA-dependent RNA polymerases in viral siRNA biogenesis.2009 · DOI: 10.1371/journal.pone.0004971 RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana.2010 · DOI: 10.1073/pnas.0904086107 Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection.2010 · DOI: 10.1105/tpc.109.073056
`At4g11130`	RNA-dependent direct polymerase involved in the production of small interfering RNAs (siRNAs).	Genetic and functional diversification of small RNA pathways in plants.2004 · DOI: 10.1371/journal.pbio.0020104 MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis.2006 · DOI: 10.1105/tpc.106.042127 An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis.2007 · DOI: 10.1105/tpc.107.051540 Nuclear gene silencing directs reception of long-distance mRNA silencing in Arabidopsis.2007 · DOI: 10.1073/pnas.0706701104 siRNA-mediated methylation of Arabidopsis telomeres.2010 · DOI: 10.1371/journal.pgen.1000986 In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing.2012 · DOI: 10.1016/j.molcel.2012.09.027 Structure and RNA template requirements of Arabidopsis RNA-DEPENDENT RNA POLYMERASE 2.2021 · DOI: 10.1073/pnas.2115899118
`At3g49500`	RNA-dependent RNA polymerase involved in post-transcriptional gene silencing (PTGS).	Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance.2000 · DOI: 10.1016/s0092-8674(00)80863-6 An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus.2000 · DOI: 10.1016/s0092-8674(00)80864-8 Geminivirus VIGS of endogenous genes requires SGS2/SDE1 and SGS3 and defines a new branch in the genetic pathway for silencing in plants.2004 · DOI: 10.1111/j.1365-313x.2004.02103.x SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis.2004 · DOI: 10.1101/gad.1231804 The Putative RNA-dependent RNA polymerase RDR6 acts synergistically with ASYMMETRIC LEAVES1 and 2 to repress BREVIPEDICELLUS and MicroRNA165/166 in Arabidopsis leaf development.2005 · DOI: 10.1105/tpc.105.033449 A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis.2005 · DOI: 10.1101/gad.1352605 Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis.2005 · DOI: 10.1016/j.cell.2005.11.035 DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7.2006 · DOI: 10.1016/j.cub.2006.03.035 Improperly terminated, unpolyadenylated mRNA of sense transgenes is targeted by RDR6-mediated RNA silencing in Arabidopsis.2007 · DOI: 10.1105/tpc.106.045724 Biochemical activities of Arabidopsis RNA-dependent RNA polymerase 6.2008 · DOI: 10.1074/jbc.m708983200 Small RNA deep sequencing reveals role for Arabidopsis thaliana RNA-dependent RNA polymerases in viral siRNA biogenesis.2009 · DOI: 10.1371/journal.pone.0004971 Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis.2010 · DOI: 10.1038/nsmb.1866

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0736200`	Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs).	No verified direct reference in this release
`Os04g0465700`	Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs).	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.096; coverage=100.724; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009615	response to virus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.096; coverage=100.724; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009616	RNAi-mediated antiviral immune response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.671; coverage=104.525; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009751	response to salicylic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.096; coverage=100.724; evalue=0.0; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010025	wax biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.096; coverage=100.724; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010267	ta-siRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.671; coverage=104.525; evalue=0.0; UniProt GO evidence=IMP:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010495	siRNA-mediated long-distance post-transcriptional gene silencing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.235; coverage=101.719; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016441	post-transcriptional gene silencing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.671; coverage=104.525; evalue=0.0; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030422	siRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.096; coverage=100.724; evalue=0.0; UniProt GO evidence=IMP:CACAO	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031047	regulatory ncRNA-mediated gene silencing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.671; coverage=104.525; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048366	leaf development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.671; coverage=104.525; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048467	gynoecium development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.671; coverage=104.525; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048544	recognition of pollen	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.671; coverage=104.525; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050832	defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.235; coverage=101.719; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051607	defense response to virus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.671; coverage=104.525; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0060148	positive regulation of post-transcriptional gene silencing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.096; coverage=100.724; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070549	siRNA-mediated gene silencing by inhibition of translation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.671; coverage=104.525; evalue=0.0; UniProt GO evidence=IMP:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140745	siRNA transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.235; coverage=101.719; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.096; coverage=100.724; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.235; coverage=101.719; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005730	nucleolus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.235; coverage=101.719; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031380	nuclear RNA-directed RNA polymerase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.096; coverage=100.724; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0036464	cytoplasmic ribonucleoprotein granule	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.671; coverage=104.525; evalue=0.0; UniProt GO evidence=IDA:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.096; coverage=100.724; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003727	single-stranded RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.235; coverage=101.719; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003887	DNA-directed DNA polymerase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.671; coverage=104.525; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003968	RNA-directed RNA polymerase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.096; coverage=100.724; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046872	metal ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.235; coverage=101.719; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071667	DNA/RNA hybrid binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.235; coverage=101.719; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G14790	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.096; coverage=100.724; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G49500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.671; coverage=104.525; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G11130	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.235; coverage=101.719; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os02g0736200	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.612; coverage=65.792; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os04g0465700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.982; coverage=98.462; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release