Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_022016 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:142460617-142462272 (+) |
| Description | Similar to tfg2: Transcription initiation factor IIF subunit beta (Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX%3D284812) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_022016 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 13 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
No hit for this species in the current source table.
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006366 | transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.287; coverage=89.643; evalue=1.18e-16; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006367 | transcription initiation at RNA polymerase II promoter | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.62; coverage=66.786; evalue=1.81e-19; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006368 | transcription elongation by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.287; coverage=89.643; evalue=1.18e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.287; coverage=89.643; evalue=1.18e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051123 | RNA polymerase II preinitiation complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.287; coverage=89.643; evalue=1.18e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.62; coverage=66.786; evalue=1.81e-19; UniProt GO evidence=HDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.287; coverage=89.643; evalue=1.18e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005674 | transcription factor TFIIF complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.62; coverage=66.786; evalue=1.81e-19; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005675 | transcription factor TFIIH holo complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.287; coverage=89.643; evalue=1.18e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015630 | microtubule cytoskeleton | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.287; coverage=89.643; evalue=1.18e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000166 | nucleotide binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.62; coverage=66.786; evalue=1.81e-19; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.62; coverage=66.786; evalue=1.81e-19; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016251 | RNA polymerase II general transcription initiation factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.62; coverage=66.786; evalue=1.81e-19; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | bta:509259 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.515; coverage=58.929; evalue=2.51e-16 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0287131 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.807; coverage=86.786; evalue=2.87e-16 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:2963 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.49; coverage=89.643; evalue=6.58e-16 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:68705 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.287; coverage=89.643; evalue=1.18e-16 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2539924 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.62; coverage=66.786; evalue=1.81e-19 | UniProtKB/Swiss-Prot DAT 2026 current_release |