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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_022000
Query referenceOH1004
LocationChr04:142257573-142258162 (-)
DescriptionSimilar to RDM1: Protein RDM1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_022000 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 6 GO annotations and 1 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g22680 Regulator of RNA-directed DNA methylation (RdDM).
A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis.2010 · DOI: 10.1016/j.cub.2010.03.062
An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation.2010 · DOI: 10.1038/nature09025

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0030422siRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.86; coverage=91.279; evalue=3.3e-45; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080188gene silencing by siRNA-directed DNA methylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.86; coverage=91.279; evalue=3.3e-45; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000419RNA polymerase V complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.86; coverage=91.279; evalue=3.3e-45; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.86; coverage=91.279; evalue=3.3e-45; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.86; coverage=91.279; evalue=3.3e-45; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.86; coverage=91.279; evalue=3.3e-45; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G22680KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.86; coverage=91.279; evalue=3.3e-45UniProtKB/Swiss-Prot DAT 2026 current_release