Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_021981 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:141832699-141836683 (+) |
| Description | Similar to SAP130B: Spliceosome-associated protein 130 B (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_021981 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 32 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g55220 |
Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. | |
At3g55200 |
Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000375 | RNA splicing, via transesterification reactions | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000387 | spliceosomal snRNP assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000388 | spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000398 | mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=86.337; coverage=100.248; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006282 | regulation of DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008380 | RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=IC:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009555 | pollen development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=86.337; coverage=100.248; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009846 | pollen germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=86.337; coverage=100.248; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042177 | negative regulation of protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043484 | regulation of RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048481 | plant ovule development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=86.337; coverage=100.248; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0055046 | microgametogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=86.337; coverage=100.248; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903241 | U2-type prespliceosome assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=86.337; coverage=100.248; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005681 | spliceosomal complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005684 | U2-type spliceosomal complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005686 | U2 snRNP | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=86.337; coverage=100.248; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005689 | U12-type spliceosomal complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=86.337; coverage=100.248; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=86.337; coverage=100.248; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034693 | U11/U12 snRNP | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071005 | U2-type precatalytic spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071006 | U2-type catalytic step 1 spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071011 | precatalytic spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071013 | catalytic step 2 spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071016 | U12-type precatalytic spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071018 | U12-type catalytic step 2 spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030620 | U2 snRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=86.337; coverage=100.248; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044877 | protein-containing complex binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G55200 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=86.337; coverage=100.248; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G55220 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=86.337; coverage=100.248; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:504962 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.423; coverage=101.155; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:23450 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.423; coverage=101.155; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:101943 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.423; coverage=101.155; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |