Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_021955 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:140941729-140947192 (+) |
| Description | Similar to ELP1: Elongator complex protein 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_021955 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 28 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g13680 |
Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine) (By similarity). |
The elongata mutants identify a functional Elongator complex in plants with a role in cell proliferation during organ growth.2005 · DOI: 10.1073/pnas.0502600102 Mutations in ABO1/ELO2, a subunit of holo-Elongator, increase abscisic acid sensitivity and drought tolerance in Arabidopsis thaliana.2006 · DOI: 10.1128/mcb.00433-06
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0002098 | tRNA wobble uridine modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.043; coverage=93.808; evalue=2.43e-130; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0002926 | tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006400 | tRNA modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006417 | regulation of translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.043; coverage=93.808; evalue=2.43e-130; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006979 | response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007252 | I-kappaB phosphorylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.56; coverage=97.833; evalue=8.44e-127; UniProt GO evidence=IDA:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008284 | positive regulation of cell population proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009734 | auxin-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009737 | response to abscisic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009738 | abscisic acid-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009787 | regulation of abscisic acid-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009965 | leaf morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010928 | regulation of auxin mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031538 | negative regulation of anthocyanin metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035265 | organ growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048530 | fruit morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051301 | cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071215 | cellular response to abscisic acid stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080178 | 5-carbamoylmethyl uridine residue modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000024 | regulation of leaf development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.043; coverage=93.808; evalue=2.43e-130; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.043; coverage=93.808; evalue=2.43e-130; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033588 | elongator holoenzyme complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000049 | tRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004672 | protein kinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.56; coverage=97.833; evalue=8.44e-127; UniProt GO evidence=IDA:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.56; coverage=97.833; evalue=8.44e-127; UniProt GO evidence=IDA:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G13680 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.822; coverage=102.864; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:8518 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.043; coverage=93.808; evalue=2.43e-130 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:230233 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.638; coverage=98.916; evalue=8.35e-125 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ocu:100009360 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.386; coverage=95.433; evalue=2.87e-126 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:140934 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.56; coverage=97.833; evalue=8.44e-127 | UniProtKB/Swiss-Prot DAT 2026 current_release |