Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_021915`
Query reference	OH1004
Location	Chr04:140144498-140146511 (-)
Description	Similar to HESO1: Protein HESO1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_021915 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 31 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g39740`	Uridylates small RNAs to trigger their degradation.	Uridylation of miRNAs by hen1 suppressor1 in Arabidopsis.2012 · DOI: 10.1016/j.cub.2012.02.052 The Arabidopsis nucleotidyl transferase HESO1 uridylates unmethylated small RNAs to trigger their degradation.2012 · DOI: 10.1016/j.cub.2012.02.051 Methylation protects microRNAs from an AGO1-associated activity that uridylates 5' RNA fragments generated by AGO1 cleavage.2014 · DOI: 10.1073/pnas.1405083111 Synergistic and independent actions of multiple terminal nucleotidyl transferases in the 3' tailing of small RNAs in Arabidopsis.2015 · DOI: 10.1371/journal.pgen.1005091 Distinct and cooperative activities of HESO1 and URT1 nucleotidyl transferases in microRNA turnover in Arabidopsis.2015 · DOI: 10.1371/journal.pgen.1005119
`At2g45620`	UTP:RNA uridylyltransferase with a marked preference for uridine polymerization and a distributive activity for the first added nucleotides.	Uridylation prevents 3' trimming of oligoadenylated mRNAs.2013 · DOI: 10.1093/nar/gkt465 Synergistic and independent actions of multiple terminal nucleotidyl transferases in the 3' tailing of small RNAs in Arabidopsis.2015 · DOI: 10.1371/journal.pgen.1005091 Distinct and cooperative activities of HESO1 and URT1 nucleotidyl transferases in microRNA turnover in Arabidopsis.2015 · DOI: 10.1371/journal.pgen.1005119 Uridylation and PABP Cooperate to Repair mRNA Deadenylated Ends in Arabidopsis.2016 · DOI: 10.1016/j.celrep.2016.02.060 A genetics screen highlights emerging roles for CPL3, RST1 and URT1 in RNA metabolism and silencing.2019 · DOI: 10.1038/s41477-019-0419-7 The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis.2021 · DOI: 10.1038/s41467-021-21382-2

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.518; coverage=72.311; evalue=1.4e-20; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000965	mitochondrial RNA 3'-end processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.703; coverage=58.964; evalue=1.61e-18; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.703; coverage=58.964; evalue=1.61e-18; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006397	mRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.518; coverage=72.311; evalue=1.4e-20; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010468	regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.944; coverage=43.028; evalue=3.31e-20; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010587	miRNA catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.955; coverage=66.335; evalue=9.05e-125; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010605	negative regulation of macromolecule metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.944; coverage=43.028; evalue=3.31e-20; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031123	RNA 3'-end processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.955; coverage=66.335; evalue=9.05e-125; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031124	mRNA 3'-end processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.42; coverage=56.972; evalue=1.1e-20; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071044	histone mRNA catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.703; coverage=58.964; evalue=1.61e-18; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0097222	mitochondrial mRNA polyadenylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.703; coverage=58.964; evalue=1.61e-18; UniProt GO evidence=IDA:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900369	negative regulation of post-transcriptional gene silencing by regulatory ncRNA	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.518; coverage=72.311; evalue=1.4e-20; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000932	P-body	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.955; coverage=66.335; evalue=9.05e-125; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.955; coverage=66.335; evalue=9.05e-125; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.42; coverage=56.972; evalue=1.1e-20; UniProt GO evidence=IDA:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.955; coverage=66.335; evalue=9.05e-125; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.703; coverage=58.964; evalue=1.61e-18; UniProt GO evidence=IDA:HPA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005759	mitochondrial matrix	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.703; coverage=58.964; evalue=1.61e-18; UniProt GO evidence=TAS:Reactome	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.944; coverage=43.028; evalue=3.31e-20; UniProt GO evidence=HDA:PomBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000287	magnesium ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.703; coverage=58.964; evalue=1.61e-18; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0002134	UTP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.703; coverage=58.964; evalue=1.61e-18; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.42; coverage=56.972; evalue=1.1e-20; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003729	mRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.518; coverage=72.311; evalue=1.4e-20; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.42; coverage=56.972; evalue=1.1e-20; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016779	nucleotidyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.955; coverage=66.335; evalue=9.05e-125; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030145	manganese ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.703; coverage=58.964; evalue=1.61e-18; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042802	identical protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.703; coverage=58.964; evalue=1.61e-18; UniProt GO evidence=IPI:IntAct	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042803	protein homodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.703; coverage=58.964; evalue=1.61e-18; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046872	metal ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.42; coverage=56.972; evalue=1.1e-20; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050265	RNA uridylyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.955; coverage=66.335; evalue=9.05e-125; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990817	poly(A) RNA polymerase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.42; coverage=56.972; evalue=1.1e-20; UniProt GO evidence=IDA:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G39740	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.955; coverage=66.335; evalue=9.05e-125	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G45620	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.518; coverage=72.311; evalue=1.4e-20	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dme:Dmel_CG5732	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.42; coverage=56.972; evalue=1.1e-20	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	hsa:55149	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.703; coverage=58.964; evalue=1.61e-18	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	spo:2539762	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.944; coverage=43.028; evalue=3.31e-20	UniProtKB/Swiss-Prot DAT 2026 current_release