Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_021716 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:135820249-135832253 (+) |
| Description | Similar to PPH: Pheophytinase%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_021716 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 18 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g13800 |
Alpha/beta hydrolase dephytylating specifically the Mg-free chlorophyll pigment (pheophytin), yielding pheophorbide. | |
At5g24850 |
May have a photoreceptor function. | No verified direct reference in this release |
At2g47590 |
Blue-light photoreceptor PHR2. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000719 | photoreactive repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.846; coverage=27.273; evalue=2.52e-14; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.846; coverage=27.273; evalue=2.52e-14; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015996 | chlorophyll catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.157; coverage=43.776; evalue=6.35e-19; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.157; coverage=43.776; evalue=6.35e-19; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.187; coverage=29.231; evalue=2.15e-12; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.157; coverage=43.776; evalue=6.35e-19; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009535 | chloroplast thylakoid membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.157; coverage=43.776; evalue=6.35e-19; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.187; coverage=29.231; evalue=2.15e-12; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.157; coverage=43.776; evalue=6.35e-19; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.846; coverage=27.273; evalue=2.52e-14; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.187; coverage=29.231; evalue=2.15e-12; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003904 | deoxyribodipyrimidine photo-lyase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.688; coverage=26.853; evalue=8.91e-13; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003913 | DNA photolyase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.846; coverage=27.273; evalue=2.52e-14; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.187; coverage=29.231; evalue=2.15e-12; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009881 | photoreceptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.187; coverage=29.231; evalue=2.15e-12; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010181 | FMN binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.187; coverage=29.231; evalue=2.15e-12; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071949 | FAD binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.846; coverage=27.273; evalue=2.52e-14; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080124 | pheophytinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.157; coverage=43.776; evalue=6.35e-19; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G47590 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.4; coverage=34.965; evalue=2.83e-12 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G13800 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.157; coverage=43.776; evalue=6.35e-19 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G24850 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.187; coverage=29.231; evalue=2.15e-12 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | gvi:glr0835 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.846; coverage=27.273; evalue=2.52e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | nph:NP_3456A | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.688; coverage=26.853; evalue=8.91e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release |