Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_021687 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:135159498-135163738 (-) |
| Description | Similar to RZ1C: Glycine-rich RNA-binding protein RZ1C (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_021687 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 35 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g04280 |
Binds RNA and DNA sequences non-specifically. | No verified direct reference in this release |
At1g60650 |
Binds RNA and DNA sequences non-specifically. | No verified direct reference in this release |
At3g26420 |
Binds RNA and DNA sequences with a preference to single-stranded nucleic acids. | No verified direct reference in this release |
At4g39260 |
Plays a role in RNA transcription or processing during stress. |
Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis.2008 · DOI: 10.1093/nar/gkn847
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000380 | alternative mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.447; coverage=22.927; evalue=1.15e-10; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006858 | extracellular transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.447; coverage=22.927; evalue=1.15e-10; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009409 | response to cold | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.618; coverage=86.829; evalue=9.46e-39; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009414 | response to water deprivation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.618; coverage=86.829; evalue=9.46e-39; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010043 | response to zinc ion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.447; coverage=22.927; evalue=1.15e-10; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016070 | RNA metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.25; coverage=23.415; evalue=1.17e-10; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045087 | innate immune response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.447; coverage=22.927; evalue=1.15e-10; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045892 | negative regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.618; coverage=86.829; evalue=9.46e-39; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048026 | positive regulation of mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.618; coverage=86.829; evalue=9.46e-39; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050658 | RNA transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.447; coverage=22.927; evalue=1.15e-10; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050688 | regulation of defense response to virus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.447; coverage=22.927; evalue=1.15e-10; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990428 | miRNA transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.447; coverage=22.927; evalue=1.15e-10; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005615 | extracellular space | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.447; coverage=22.927; evalue=1.15e-10; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.618; coverage=86.829; evalue=9.46e-39; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.618; coverage=86.829; evalue=9.46e-39; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.434; coverage=51.707; evalue=8.14e-33; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.447; coverage=22.927; evalue=1.15e-10; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005777 | peroxisome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.447; coverage=22.927; evalue=1.15e-10; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.447; coverage=22.927; evalue=1.15e-10; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.267; coverage=78.537; evalue=5.48e-18; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.618; coverage=86.829; evalue=9.46e-39; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009505 | plant-type cell wall | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.447; coverage=22.927; evalue=1.15e-10; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.447; coverage=22.927; evalue=1.15e-10; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.434; coverage=51.707; evalue=8.14e-33; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000166 | nucleotide binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.267; coverage=78.537; evalue=5.48e-18; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003676 | nucleic acid binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.618; coverage=86.829; evalue=9.46e-39; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.434; coverage=51.707; evalue=8.14e-33; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.618; coverage=86.829; evalue=9.46e-39; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.618; coverage=86.829; evalue=9.46e-39; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003727 | single-stranded RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.447; coverage=22.927; evalue=1.15e-10; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.618; coverage=86.829; evalue=9.46e-39; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.618; coverage=86.829; evalue=9.46e-39; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031490 | chromatin DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.618; coverage=86.829; evalue=9.46e-39; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035197 | siRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.447; coverage=22.927; evalue=1.15e-10; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035198 | miRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.447; coverage=22.927; evalue=1.15e-10; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G60650 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.434; coverage=51.707; evalue=8.14e-33 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G26420 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.267; coverage=78.537; evalue=5.48e-18 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G39260 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.447; coverage=22.927; evalue=1.15e-10 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G04280 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.618; coverage=86.829; evalue=9.46e-39 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bna:106438956 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.25; coverage=23.415; evalue=1.17e-10 | UniProtKB/Swiss-Prot DAT 2026 current_release |