Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_021630 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:133945715-133947128 (-) |
| Description | Similar to RTNLB5: Reticulon-like protein B5 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_021630 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 14 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g46170 |
Reticulon-like protein B5. | No verified direct reference in this release |
At3g61560 |
Reticulon-like protein B6. | No verified direct reference in this release |
At4g11220 |
Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus. | |
At1g64090 |
Reticulon-like protein B3. | No verified direct reference in this release |
At4g23630 |
Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0009617 | response to bacterium | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.441; coverage=93.208; evalue=1.94e-79; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050687 | negative regulation of defense response to virus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.869; coverage=80.755; evalue=4.49e-70; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071786 | endoplasmic reticulum tubular network organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.515; coverage=74.717; evalue=4.31e-66; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000325 | plant-type vacuole | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=54.04; coverage=74.717; evalue=2.5e-65; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.515; coverage=74.717; evalue=4.31e-66; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005774 | vacuolar membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.78; coverage=92.83; evalue=5.52e-66; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.441; coverage=93.208; evalue=1.94e-79; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005789 | endoplasmic reticulum membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.441; coverage=93.208; evalue=1.94e-79; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.515; coverage=74.717; evalue=4.31e-66; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.441; coverage=93.208; evalue=1.94e-79; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.869; coverage=80.755; evalue=4.49e-70; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071782 | endoplasmic reticulum tubular network | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.515; coverage=74.717; evalue=4.31e-66; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0098554 | cytoplasmic side of endoplasmic reticulum membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.515; coverage=74.717; evalue=4.31e-66; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.515; coverage=74.717; evalue=4.31e-66; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G64090 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.78; coverage=92.83; evalue=5.52e-66 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G46170 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.441; coverage=93.208; evalue=1.94e-79 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G61560 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.869; coverage=80.755; evalue=4.49e-70 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G11220 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.515; coverage=74.717; evalue=4.31e-66 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G23630 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=54.04; coverage=74.717; evalue=2.5e-65 | UniProtKB/Swiss-Prot DAT 2026 current_release |