Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_021563`
Query reference	OH1004
Location	Chr04:132412507-132413972 (+)
Description	Similar to GIF3: GRF1-interacting factor 3 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_021563 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 16 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g00850`	Transcription coactivator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues (By similarity).	The Arabidopsis GRF-INTERACTING FACTOR gene family performs an overlapping function in determining organ size as well as multiple developmental properties.2009 · DOI: 10.1104/pp.109.141838
`At1g01160`	Transcription coactivator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues (By similarity).	The Arabidopsis GRF-INTERACTING FACTOR gene family performs an overlapping function in determining organ size as well as multiple developmental properties.2009 · DOI: 10.1104/pp.109.141838
`At5g28640`	Transcription coactivator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues.	A transcriptional coactivator, AtGIF1, is involved in regulating leaf growth and morphology in Arabidopsis.2004 · DOI: 10.1073/pnas.0405450101 The transcription factor AtGRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thaliana.2005 · DOI: 10.1111/j.1365-313x.2005.02429.x The Arabidopsis GRF-INTERACTING FACTOR gene family performs an overlapping function in determining organ size as well as multiple developmental properties.2009 · DOI: 10.1104/pp.109.141838 Stable establishment of cotyledon identity during embryogenesis in Arabidopsis by ANGUSTIFOLIA3 and HANABA TARANU.2012 · DOI: 10.1242/dev.081547

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0733600`	Transcription coactivator that plays a role in the regulation of meristematic function in leaves, stems and inflorescences.	The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and yield in rice.2016 · DOI: 10.1111/pbi.12569 OsGIF1 Positively Regulates the Sizes of Stems, Leaves, and Grains in Rice.2017 · DOI: 10.3389/fpls.2017.01730 Conserved functional control, but distinct regulation, of cell proliferation in rice and Arabidopsis leaves revealed by comparative analysis of GRF-INTERACTING FACTOR 1 orthologs.2018 · DOI: 10.1242/dev.159624

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.977; coverage=100.0; evalue=1.82e-29; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008283	cell population proliferation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.294; coverage=39.535; evalue=2.76e-19; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009955	adaxial/abaxial pattern specification	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.667; coverage=25.116; evalue=4.47e-17; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010449	root meristem growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.667; coverage=25.116; evalue=4.47e-17; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010468	regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.667; coverage=25.116; evalue=4.47e-17; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010582	floral meristem determinacy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.294; coverage=39.535; evalue=2.76e-19; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0040029	epigenetic regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.977; coverage=100.0; evalue=1.82e-29; UniProt GO evidence=NAS:ComplexPortal	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045787	positive regulation of cell cycle	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.865; coverage=86.047; evalue=1.01e-23; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.682; coverage=40.93; evalue=2.5e-20; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048316	seed development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.682; coverage=40.93; evalue=2.5e-20; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048366	leaf development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.977; coverage=100.0; evalue=1.82e-29; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048825	cotyledon development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.667; coverage=25.116; evalue=4.47e-17; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051301	cell division	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.977; coverage=100.0; evalue=1.82e-29; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.977; coverage=100.0; evalue=1.82e-29; UniProt GO evidence=IPI:ComplexPortal	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.682; coverage=40.93; evalue=2.5e-20; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003713	transcription coactivator activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.977; coverage=100.0; evalue=1.82e-29; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G01160	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.865; coverage=86.047; evalue=1.01e-23	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G00850	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.977; coverage=100.0; evalue=1.82e-29	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G28640	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.667; coverage=25.116; evalue=4.47e-17	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0733600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.682; coverage=40.93; evalue=2.5e-20	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	zma:100101544	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.294; coverage=39.535; evalue=2.76e-19	UniProtKB/Swiss-Prot DAT 2026 current_release