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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_021396
Query referenceOH1004
LocationChr04:128722867-128723512 (-)
DescriptionSimilar to RIBA1: Bifunctional riboflavin biosynthesis protein RIBA 1%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_021396 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 8 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g64300 Involved in riboflavin biosynthesis.
Deficiency in riboflavin biosynthesis affects tetrapyrrole biosynthesis in etiolated Arabidopsis tissue.2012 · DOI: 10.1007/s11103-011-9846-1
Arabidopsis RIBA proteins: two out of three isoforms have lost their bifunctional activity in riboflavin biosynthesis.2012 · DOI: 10.3390/ijms131114086
At5g59750 Involved in riboflavin biosynthesis.
Arabidopsis RIBA proteins: two out of three isoforms have lost their bifunctional activity in riboflavin biosynthesis.2012 · DOI: 10.3390/ijms131114086

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0481950 Involved in riboflavin biosynthesis. No verified direct reference in this release
Os02g0572400 Involved in riboflavin biosynthesis. No verified direct reference in this release
Os05g0460600 Involved in riboflavin biosynthesis. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009231riboflavin biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.968; coverage=36.842; evalue=2.36e-13; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.794; coverage=36.842; evalue=1.54e-11; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.968; coverage=36.842; evalue=2.36e-13; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.968; coverage=36.842; evalue=2.36e-13; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003935GTP cyclohydrolase II activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.968; coverage=36.842; evalue=2.36e-13; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005525GTP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.968; coverage=36.842; evalue=2.36e-13; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:00086863,4-dihydroxy-2-butanone-4-phosphate synthase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.968; coverage=36.842; evalue=2.36e-13; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.968; coverage=36.842; evalue=2.36e-13; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G59750KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.794; coverage=36.842; evalue=1.54e-11UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G64300KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.968; coverage=36.842; evalue=2.36e-13UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0572400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=90.323; coverage=18.129; evalue=2.32e-11UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os05g0460600KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=83.871; coverage=18.129; evalue=7.95e-10UniProtKB/Swiss-Prot DAT 2026 current_release