Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_021036 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:119458959-119460215 (-) |
| Description | Similar to PKS1: Protein PHYTOCHROME KINASE SUBSTRATE 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_021036 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 12 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g02950 |
May be responsible for light-regulated cytoplasmic sequestration of phytochromes or may be a negative regulator of phytochrome B signaling. |
PKS1, a substrate phosphorylated by phytochrome that modulates light signaling in Arabidopsis.1999 · DOI: 10.1126/science.284.5419.1539 PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism.2006 · DOI: 10.1073/pnas.0603799103
|
At1g14280 |
Acts predominantly in the phot1 pathway. | No verified direct reference in this release |
At5g04190 |
Modulates phytochrome-mediated control of hypocotyl growth orientation. | No verified direct reference in this release |
At1g18810 |
Probably involved in the phytochrome signaling pathway. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0009585 | red, far-red light phototransduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.967; coverage=87.081; evalue=4.13e-29; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009611 | response to wounding | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.167; coverage=91.866; evalue=2.66e-15; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009638 | phototropism | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.967; coverage=87.081; evalue=4.13e-29; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009958 | positive gravitropism | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.967; coverage=87.081; evalue=4.13e-29; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010017 | red or far-red light signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.967; coverage=87.081; evalue=4.13e-29; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010114 | response to red light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.967; coverage=87.081; evalue=4.13e-29; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010218 | response to far red light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.967; coverage=87.081; evalue=4.13e-29; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048366 | leaf development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.635; coverage=89.234; evalue=8.43e-26; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.967; coverage=87.081; evalue=4.13e-29; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.967; coverage=87.081; evalue=4.13e-29; UniProt GO evidence=NAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.967; coverage=87.081; evalue=4.13e-29; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.503; coverage=87.56; evalue=7.09e-13; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G14280 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.635; coverage=89.234; evalue=8.43e-26 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G18810 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.503; coverage=87.56; evalue=7.09e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G02950 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.967; coverage=87.081; evalue=4.13e-29 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G04190 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.167; coverage=91.866; evalue=2.66e-15 | UniProtKB/Swiss-Prot DAT 2026 current_release |