Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_021009`
Query reference	OH1004
Location	Chr04:118660467-118662294 (+)
Description	Similar to TLP1: Protein TWIN LOV 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_021009 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 34 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g02710`	Protein TWIN LOV 1.	No verified direct reference in this release
`At5g58140`	Protein kinase that acts as a blue light photoreceptor in a signal-transduction pathway for photo-induced movements.	Arabidopsis NPL1: a phototropin homolog controlling the chloroplast high-light avoidance response.2001 · DOI: 10.1126/science.291.5511.2138 Arabidopsis nph1 and npl1: blue light receptors that mediate both phototropism and chloroplast relocation.2001 · DOI: 10.1073/pnas.101137598 Phot1 and phot2 mediate blue light-induced transient increases in cytosolic Ca2+ differently in Arabidopsis leaves.2003 · DOI: 10.1073/pnas.1336802100 A transgene encoding a blue-light receptor, phot1, restores blue-light responses in the Arabidopsis phot1 phot2 double mutant.2004 · DOI: 10.1093/jxb/erh044 Functional analysis of each blue light receptor, cry1, cry2, phot1, and phot2, by using combinatorial multiple mutants in Arabidopsis.2004 · DOI: 10.1073/pnas.0305984101 RPT2 is a signal transducer involved in phototropic response and stomatal opening by association with phototropin 1 in Arabidopsis thaliana.2004 · DOI: 10.1105/tpc.019901 Biochemical characterization of plasma membrane H+-ATPase activation in guard cell protoplasts of Arabidopsis thaliana in response to blue light.2005 · DOI: 10.1093/pcp/pci104 An ATP-Binding Cassette Transporter, ABCB19, Regulates Leaf Position and Morphology during Phototropin1-Mediated Blue Light Responses.2020 · DOI: 10.1104/pp.20.00223
`At3g45780`	Protein kinase that acts as a blue light (BL) photoreceptor in a signal-transduction pathway for photo-induced movements.	RPT2. A signal transducer of the phototropic response in Arabidopsis.2000 · DOI: 10.1105/tpc.12.2.225 Unexpected roles for cryptochrome 2 and phototropin revealed by high-resolution analysis of blue light-mediated hypocotyl growth inhibition.2001 · DOI: 10.1046/j.1365-313x.2001.01038.x Phototropin 1 is required for high-fluence blue-light-mediated mRNA destabilization.2003 · DOI: 10.1023/a:1022393406204 Phot1 and phot2 mediate blue light-induced transient increases in cytosolic Ca2+ differently in Arabidopsis leaves.2003 · DOI: 10.1073/pnas.1336802100 A transgene encoding a blue-light receptor, phot1, restores blue-light responses in the Arabidopsis phot1 phot2 double mutant.2004 · DOI: 10.1093/jxb/erh044 Functional analysis of each blue light receptor, cry1, cry2, phot1, and phot2, by using combinatorial multiple mutants in Arabidopsis.2004 · DOI: 10.1073/pnas.0305984101 RPT2 is a signal transducer involved in phototropic response and stomatal opening by association with phototropin 1 in Arabidopsis thaliana.2004 · DOI: 10.1105/tpc.019901 Biochemical characterization of plasma membrane H+-ATPase activation in guard cell protoplasts of Arabidopsis thaliana in response to blue light.2005 · DOI: 10.1093/pcp/pci104 PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism.2006 · DOI: 10.1073/pnas.0603799103 In vivo phosphorylation site mapping and functional characterization of Arabidopsis phototropin 1.2008 · DOI: 10.1093/mp/ssm017 An ATP-Binding Cassette Transporter, ABCB19, Regulates Leaf Position and Morphology during Phototropin1-Mediated Blue Light Responses.2020 · DOI: 10.1104/pp.20.00223

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0304200`	Protein kinase that acts as a blue light photoreceptor in a signal-transduction pathway for phototropic responses.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0007623	circadian rhythm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009637	response to blue light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.908; coverage=97.756; evalue=7.66e-142; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009638	phototropism	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009639	response to red or far red light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.446; coverage=100.748; evalue=1.83e-52; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009785	blue light signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009902	chloroplast relocation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009903	chloroplast avoidance movement	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.446; coverage=100.748; evalue=1.83e-52; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009904	chloroplast accumulation movement	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.446; coverage=100.748; evalue=1.83e-52; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010118	stomatal movement	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010119	regulation of stomatal movement	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.446; coverage=100.748; evalue=1.83e-52; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010155	regulation of proton transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.446; coverage=100.748; evalue=1.83e-52; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046777	protein autophosphorylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0060772	leaf phyllotactic patterning	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.446; coverage=100.748; evalue=1.83e-52; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071483	cellular response to blue light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.446; coverage=100.748; evalue=1.83e-52; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901371	regulation of leaf morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.446; coverage=100.748; evalue=1.83e-52; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000325	plant-type vacuole	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.446; coverage=100.748; evalue=1.83e-52; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.908; coverage=97.756; evalue=7.66e-142; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005794	Golgi apparatus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009536	plastid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009898	cytoplasmic side of plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.446; coverage=100.748; evalue=1.83e-52; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009986	cell surface	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.446; coverage=100.748; evalue=1.83e-52; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016020	membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003729	mRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.446; coverage=100.748; evalue=1.83e-52; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004672	protein kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.446; coverage=100.748; evalue=1.83e-52; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004674	protein serine/threonine kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009881	photoreceptor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.908; coverage=97.756; evalue=7.66e-142; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009882	blue light photoreceptor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010181	FMN binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016301	kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042802	identical protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0106310	protein serine kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54; UniProt GO evidence=IEA:RHEA	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G02710	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.908; coverage=97.756; evalue=7.66e-142	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G45780	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.446; coverage=100.748; evalue=1.83e-52	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G58140	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.564; coverage=97.257; evalue=5.23e-54	UniProtKB/Swiss-Prot DAT 2026 current_release