Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_020491 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:83319305-83321997 (-) |
| Description | Similar to FREE1: Protein FREE1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_020491 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 33 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g20110 |
Endosomal sorting complex required for transport (ESCRT) component regulating multivesicular body (MVB) protein sorting and plant growth. |
A unique plant ESCRT component, FREE1, regulates multivesicular body protein sorting and plant growth.2014 · DOI: 10.1016/j.cub.2014.09.014 Dual roles of an Arabidopsis ESCRT component FREE1 in regulating vacuolar protein transport and autophagic degradation.2015 · DOI: 10.1073/pnas.1421271112 FYVE1 is essential for vacuole biogenesis and intracellular trafficking in Arabidopsis.2015 · DOI: 10.1104/pp.114.253377
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0007034 | vacuolar transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.282; coverage=22.414; evalue=1.06e-07; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009738 | abscisic acid-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.945; coverage=52.299; evalue=3.66e-26; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.945; coverage=52.299; evalue=3.66e-26; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015031 | protein transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.945; coverage=52.299; evalue=3.66e-26; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030100 | regulation of endocytosis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.826; coverage=26.437; evalue=4.14e-07; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031623 | receptor internalization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.282; coverage=22.414; evalue=1.06e-07; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032456 | endocytic recycling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.282; coverage=22.414; evalue=1.06e-07; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034599 | cellular response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.512; coverage=24.713; evalue=4.91e-07; UniProt GO evidence=IDA:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034605 | cellular response to heat | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.512; coverage=24.713; evalue=4.91e-07; UniProt GO evidence=IDA:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036258 | multivesicular body assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.945; coverage=52.299; evalue=3.66e-26; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060586 | multicellular organismal-level iron ion homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.945; coverage=52.299; evalue=3.66e-26; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070676 | intralumenal vesicle formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.945; coverage=52.299; evalue=3.66e-26; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071474 | cellular hyperosmotic response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.512; coverage=24.713; evalue=4.91e-07; UniProt GO evidence=IDA:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080135 | regulation of cellular response to stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.512; coverage=24.713; evalue=4.91e-07; UniProt GO evidence=IMP:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900067 | regulation of cellular response to alkaline pH | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.945; coverage=52.299; evalue=3.66e-26; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000813 | ESCRT I complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.945; coverage=52.299; evalue=3.66e-26; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.945; coverage=52.299; evalue=3.66e-26; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.826; coverage=26.437; evalue=4.14e-07; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005768 | endosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.826; coverage=26.437; evalue=4.14e-07; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005769 | early endosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.282; coverage=22.414; evalue=1.06e-07; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005771 | multivesicular body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.945; coverage=52.299; evalue=3.66e-26; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010008 | endosome membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.282; coverage=22.414; evalue=1.06e-07; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.512; coverage=24.713; evalue=4.91e-07; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031902 | late endosome membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.945; coverage=52.299; evalue=3.66e-26; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044354 | macropinosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.512; coverage=24.713; evalue=4.91e-07; UniProt GO evidence=IDA:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045335 | phagocytic vesicle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.512; coverage=24.713; evalue=4.91e-07; UniProt GO evidence=IDA:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.945; coverage=52.299; evalue=3.66e-26; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.945; coverage=52.299; evalue=3.66e-26; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0017124 | SH3 domain binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.826; coverage=26.437; evalue=4.14e-07; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032266 | phosphatidylinositol-3-phosphate binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.512; coverage=24.713; evalue=4.91e-07; UniProt GO evidence=IDA:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035091 | phosphatidylinositol binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.282; coverage=22.414; evalue=1.06e-07; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043130 | ubiquitin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.945; coverage=52.299; evalue=3.66e-26; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060090 | molecular adaptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.512; coverage=24.713; evalue=4.91e-07; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G20110 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.945; coverage=52.299; evalue=3.66e-26 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0292924 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.512; coverage=24.713; evalue=4.91e-07 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:55680 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.826; coverage=26.437; evalue=4.14e-07 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100173704 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.826; coverage=26.437; evalue=4.14e-07 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | uma:UMAG_03862 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.282; coverage=22.414; evalue=1.06e-07 | UniProtKB/Swiss-Prot DAT 2026 current_release |