Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_020346`
Query reference	OH1004
Location	Chr04:68491103-68492669 (-)
Description	Similar to HDT1: Histone deacetylase HDT1 (Glycine max OX%3D3847)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_020346 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 18 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g44750`	Probably mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4).	Functional analysis of HD2 histone deacetylase homologues in Arabidopsis thaliana.2000 · DOI: 10.1046/j.1365-313x.2000.00711.x Repression of gene expression by Arabidopsis HD2 histone deacetylases.2003 · DOI: 10.1046/j.1365-313x.2003.01714.x Expression and function of HD2-type histone deacetylases in Arabidopsis development.2004 · DOI: 10.1111/j.1365-313x.2004.02083.x
`At5g03740`	Probably mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4).	Repression of gene expression by Arabidopsis HD2 histone deacetylases.2003 · DOI: 10.1046/j.1365-313x.2003.01714.x Identification of AtHD2C as a novel regulator of abscisic acid responses in Arabidopsis.2006 · DOI: 10.1111/j.1365-313x.2006.02678.x

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006325	chromatin organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.525; coverage=94.574; evalue=4.69e-27; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.525; coverage=94.574; evalue=4.69e-27; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009294	DNA-mediated transformation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.235; coverage=32.946; evalue=7.87e-20; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009409	response to cold	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.288; coverage=91.473; evalue=1.8e-18; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009414	response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.288; coverage=91.473; evalue=1.8e-18; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009651	response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.288; coverage=91.473; evalue=1.8e-18; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.288; coverage=91.473; evalue=1.8e-18; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009944	polarity specification of adaxial/abaxial axis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.235; coverage=32.946; evalue=7.87e-20; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010162	seed dormancy process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.235; coverage=32.946; evalue=7.87e-20; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.288; coverage=91.473; evalue=1.8e-18; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048364	root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.235; coverage=32.946; evalue=7.87e-20; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.235; coverage=32.946; evalue=7.87e-20; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005730	nucleolus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.525; coverage=94.574; evalue=4.69e-27; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.288; coverage=91.473; evalue=1.8e-18; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.288; coverage=91.473; evalue=1.8e-18; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004407	histone deacetylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.235; coverage=32.946; evalue=7.87e-20; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.525; coverage=94.574; evalue=4.69e-27; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016787	hydrolase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.525; coverage=94.574; evalue=4.69e-27; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G44750	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.235; coverage=32.946; evalue=7.87e-20	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G03740	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.288; coverage=91.473; evalue=1.8e-18	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	gmx:547649	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.525; coverage=94.574; evalue=4.69e-27	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	zma:542636	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.235; coverage=32.946; evalue=8.19e-16	UniProtKB/Swiss-Prot DAT 2026 current_release