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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_020240
Query referenceOH1004
LocationChr04:59478062-59480461 (-)
DescriptionSimilar to GAL1: Galactokinase (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_020240 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 31 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g06580 Sugar-1-kinase with a very high substrate specificity for the alpha-anomeric configuration of D-galacose (D-Gal). No verified direct reference in this release
At1g28490 Vesicle trafficking protein that functions in the secretory pathway.
OSM1/SYP61: a syntaxin protein in Arabidopsis controls abscisic acid-mediated and non-abscisic acid-mediated responses to abiotic stress.2002 · DOI: 10.1105/tpc.006981
YKT6 is a core constituent of membrane fusion machineries at the Arabidopsis trans-Golgi network.2005 · DOI: 10.1016/j.jmb.2005.04.061
Isolation and proteomic analysis of the SYP61 compartment reveal its role in exocytic trafficking in Arabidopsis.2012 · DOI: 10.1038/cr.2011.129
Arabidopsis SNAREs SYP61 and SYP121 coordinate the trafficking of plasma membrane aquaporin PIP2;7 to modulate the cell membrane water permeability.2014 · DOI: 10.1105/tpc.114.127159
CESA TRAFFICKING INHIBITOR inhibits cellulose deposition and interferes with the trafficking of cellulose synthase complexes and their associated proteins KORRIGAN1 and POM2/CELLULOSE SYNTHASE INTERACTIVE PROTEIN1.2015 · DOI: 10.1104/pp.114.249003
At3g03920 Required for ribosome biogenesis. No verified direct reference in this release
At5g18180 Required for ribosome biogenesis. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000454snoRNA guided rRNA pseudouridine synthesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=11.719; evalue=7.1e-13; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006012galactose metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.794; coverage=27.865; evalue=2.95e-14; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006886intracellular protein transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.604; coverage=26.302; evalue=1.65e-13; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006887exocytosisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.604; coverage=26.302; evalue=1.65e-13; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006906vesicle fusionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.604; coverage=26.302; evalue=1.65e-13; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009738abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.604; coverage=26.302; evalue=1.65e-13; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031120snRNA pseudouridine synthesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=64.444; coverage=11.719; evalue=3.64e-10; UniProt GO evidence=IEA:EnsemblFungiUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046835carbohydrate phosphorylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.794; coverage=27.865; evalue=2.95e-14; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048193Golgi vesicle transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.604; coverage=26.302; evalue=1.65e-13; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048278vesicle dockingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.604; coverage=26.302; evalue=1.65e-13; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0052324plant-type cell wall cellulose biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.604; coverage=26.302; evalue=1.65e-13; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=11.719; evalue=7.1e-13; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=11.719; evalue=7.1e-13; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.794; coverage=27.865; evalue=2.95e-14; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005794Golgi apparatusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.604; coverage=26.302; evalue=1.65e-13; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005802trans-Golgi networkCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.604; coverage=26.302; evalue=1.65e-13; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.794; coverage=27.865; evalue=2.95e-14; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009535chloroplast thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=11.719; evalue=7.1e-13; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010494cytoplasmic stress granuleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=11.719; evalue=7.1e-13; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0012505endomembrane systemCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.604; coverage=26.302; evalue=1.65e-13; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031201SNARE complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.604; coverage=26.302; evalue=1.65e-13; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031429box H/ACA snoRNP complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=11.719; evalue=7.1e-13; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032588trans-Golgi network membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.604; coverage=26.302; evalue=1.65e-13; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000149SNARE bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.604; coverage=26.302; evalue=1.65e-13; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=11.719; evalue=7.1e-13; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004335galactokinase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.794; coverage=27.865; evalue=2.95e-14; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005484SNAP receptor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.604; coverage=26.302; evalue=1.65e-13; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.794; coverage=27.865; evalue=2.95e-14; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0034513box H/ACA snoRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=11.719; evalue=7.1e-13; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042802identical protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=64.444; coverage=11.719; evalue=3.64e-10; UniProt GO evidence=IEA:EnsemblFungiUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.794; coverage=27.865; evalue=2.95e-14; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G28490KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.604; coverage=26.302; evalue=1.65e-13UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G03920KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=11.719; evalue=7.1e-13UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G06580KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.794; coverage=27.865; evalue=2.95e-14UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G18180KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=68.889; coverage=11.719; evalue=1.93e-11UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGpic:PICST_75322KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=64.444; coverage=11.719; evalue=3.64e-10UniProtKB/Swiss-Prot DAT 2026 current_release