Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_019053 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:22828514-22831359 (+) |
| Description | Similar to At3g25430: Poly(A)-specific ribonuclease PARN-like (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_019053 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 37 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g25430 |
3'-exoribonuclease that has a preference for poly(A) tails of mRNAs, thereby efficiently degrading poly(A) tails. | No verified direct reference in this release |
At1g55870 |
3'-exoribonuclease that has a preference for poly(A) tails of mRNAs, thereby efficiently degrading poly(A) tails. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000289 | nuclear-transcribed mRNA poly(A) tail shortening | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.76; coverage=66.989; evalue=2.95e-27; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000495 | box H/ACA sno(s)RNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.476; coverage=101.449; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006952 | defense response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.796; coverage=101.127; evalue=1.18e-58; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006970 | response to osmotic stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.796; coverage=101.127; evalue=1.18e-58; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007292 | female gamete generation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009451 | RNA modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009651 | response to salt stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.796; coverage=101.127; evalue=1.18e-58; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009737 | response to abscisic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.796; coverage=101.127; evalue=1.18e-58; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009751 | response to salicylic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.796; coverage=101.127; evalue=1.18e-58; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010587 | miRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032212 | positive regulation of telomere maintenance via telomerase | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24; UniProt GO evidence=IMP:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051321 | meiotic cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.76; coverage=66.989; evalue=2.95e-27; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071051 | poly(A)-dependent snoRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090669 | telomerase RNA stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24; UniProt GO evidence=IMP:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0180035 | lncRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24; UniProt GO evidence=IMP:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904872 | regulation of telomerase RNA localization to Cajal body | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24; UniProt GO evidence=IMP:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905392 | plant organ morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.476; coverage=101.449; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990431 | priRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.76; coverage=66.989; evalue=2.95e-27; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990432 | siRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.76; coverage=66.989; evalue=2.95e-27; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.476; coverage=101.449; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.76; coverage=66.989; evalue=2.95e-27; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.796; coverage=101.127; evalue=1.18e-58; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.476; coverage=101.449; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000175 | 3'-5'-RNA exonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.476; coverage=101.449; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.476; coverage=101.449; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003730 | mRNA 3'-UTR binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004518 | nuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004535 | poly(A)-specific ribonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.476; coverage=101.449; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019901 | protein kinase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043169 | cation binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.476; coverage=101.449; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.476; coverage=101.449; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070034 | telomerase RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24; UniProt GO evidence=IPI:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G55870 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.796; coverage=101.127; evalue=1.18e-58 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G25430 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.476; coverage=101.449; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:5073 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.766; coverage=68.921; evalue=7.37e-24 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100172259 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.766; coverage=68.921; evalue=1.07e-23 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xla:394409 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.76; coverage=66.989; evalue=2.95e-27 | UniProtKB/Swiss-Prot DAT 2026 current_release |