Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_018667 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:16433246-16434565 (-) |
| Description | Similar to RNF4: E3 ubiquitin-protein ligase RNF4 (Homo sapiens OX%3D9606) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_018667 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 47 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g03510 |
E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of aquaporin PIP2-1. |
Rma1, a novel type of RING finger protein conserved from Arabidopsis to human, is a membrane-bound ubiquitin ligase.2001 · DOI: 10.1242/jcs.114.10.1949
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.476; coverage=43.75; evalue=1.78e-07; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.938; coverage=26.667; evalue=8.18e-08; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007283 | spermatogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.938; coverage=26.667; evalue=8.18e-08; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.938; coverage=26.667; evalue=8.18e-08; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030154 | cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.103; coverage=24.167; evalue=3.01e-07; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032355 | response to estradiol | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.938; coverage=26.667; evalue=8.18e-08; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032527 | protein exit from endoplasmic reticulum | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.476; coverage=43.75; evalue=1.78e-07; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036503 | ERAD pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.476; coverage=43.75; evalue=1.78e-07; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044752 | response to human chorionic gonadotropin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.938; coverage=26.667; evalue=8.18e-08; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046685 | response to arsenic-containing substance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051865 | protein autoubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070534 | protein K63-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070936 | protein K48-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070979 | protein K11-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071243 | cellular response to arsenic-containing substance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.938; coverage=26.667; evalue=8.18e-08; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071345 | cellular response to cytokine stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.938; coverage=26.667; evalue=8.18e-08; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071394 | cellular response to testosterone stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.938; coverage=26.667; evalue=8.18e-08; UniProt GO evidence=IDA:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071480 | cellular response to gamma radiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.938; coverage=26.667; evalue=8.18e-08; UniProt GO evidence=IMP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072711 | cellular response to hydroxyurea | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.938; coverage=26.667; evalue=8.18e-08; UniProt GO evidence=IMP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0085020 | protein K6-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090169 | regulation of spindle assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090234 | regulation of kinetochore assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0120186 | negative regulation of protein localization to chromatin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=IDA:UniProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.476; coverage=43.75; evalue=1.78e-07; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005789 | endoplasmic reticulum membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.476; coverage=43.75; evalue=1.78e-07; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.476; coverage=43.75; evalue=1.78e-07; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016604 | nuclear body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990752 | microtubule end | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.938; coverage=26.667; evalue=8.18e-08; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0017025 | TBP-class protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.938; coverage=26.667; evalue=8.18e-08; UniProt GO evidence=IDA:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030331 | nuclear estrogen receptor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.938; coverage=26.667; evalue=8.18e-08; UniProt GO evidence=IPI:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031491 | nucleosome binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031624 | ubiquitin conjugating enzyme binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.938; coverage=26.667; evalue=8.18e-08; UniProt GO evidence=IPI:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032184 | SUMO polymer binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=IPI:IntAct | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044390 | ubiquitin-like protein conjugating enzyme binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.476; coverage=43.75; evalue=1.78e-07; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050681 | nuclear androgen receptor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.938; coverage=26.667; evalue=8.18e-08; UniProt GO evidence=IPI:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G03510 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.476; coverage=43.75; evalue=1.78e-07 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:6047 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.938; coverage=26.667; evalue=8.16e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:19822 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.938; coverage=26.667; evalue=8.18e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:67504 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.103; coverage=24.167; evalue=3.01e-07 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:29274 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.938; coverage=26.667; evalue=8.18e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release |