Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_018014 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:5109539-5111503 (+) |
| Description | Similar to CYCH1-1: Cyclin-H1-1 (Oryza sativa subsp. japonica OX%3D39947) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_018014 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 25 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g27620 |
Associates with CDK-2 and CDK-3 and activates the CDK kinases. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os03g0737600 |
Involved in cell cycle regulation. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.362; coverage=100.0; evalue=5.1e-131; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.612; coverage=97.101; evalue=9.41e-136; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006367 | transcription initiation at RNA polymerase II promoter | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.612; coverage=97.101; evalue=9.41e-136; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009414 | response to water deprivation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.362; coverage=100.0; evalue=5.1e-131; UniProt GO evidence=IMP:CACAO | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009637 | response to blue light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.362; coverage=100.0; evalue=5.1e-131; UniProt GO evidence=IMP:CACAO | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010119 | regulation of stomatal movement | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.362; coverage=100.0; evalue=5.1e-131; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050821 | protein stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.946; coverage=74.783; evalue=7.27e-33; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051301 | cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.612; coverage=97.101; evalue=9.41e-136; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072593 | reactive oxygen species metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.362; coverage=100.0; evalue=5.1e-131; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990069 | stomatal opening | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.362; coverage=100.0; evalue=5.1e-131; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000045 | regulation of G1/S transition of mitotic cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.946; coverage=74.783; evalue=7.27e-33; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000070 | regulation of response to water deprivation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.362; coverage=100.0; evalue=5.1e-131; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.946; coverage=74.783; evalue=7.27e-33; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000439 | transcription factor TFIIH core complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.946; coverage=74.783; evalue=7.27e-33; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.612; coverage=97.101; evalue=9.41e-136; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.946; coverage=74.783; evalue=7.27e-33; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005675 | transcription factor TFIIH holo complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.946; coverage=74.783; evalue=7.27e-33; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.362; coverage=100.0; evalue=5.1e-131; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070516 | CAK-ERCC2 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.946; coverage=74.783; evalue=7.27e-33; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070985 | transcription factor TFIIK complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.612; coverage=97.101; evalue=9.41e-136; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004672 | protein kinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.362; coverage=100.0; evalue=5.1e-131; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004693 | cyclin-dependent protein serine/threonine kinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.946; coverage=74.783; evalue=1.83e-32; UniProt GO evidence=ISS:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016251 | RNA polymerase II general transcription initiation factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.946; coverage=74.783; evalue=1.83e-32; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016301 | kinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.946; coverage=74.783; evalue=7.27e-33; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.612; coverage=97.101; evalue=9.41e-136; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G27620 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.362; coverage=100.0; evalue=5.1e-131 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os03g0737600 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.612; coverage=97.101; evalue=9.41e-136 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:66671 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.946; coverage=74.783; evalue=1.83e-32 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:84389 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.946; coverage=74.783; evalue=7.27e-33 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xla:394356 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.454; coverage=68.986; evalue=6.04e-33 | UniProtKB/Swiss-Prot DAT 2026 current_release |