Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_017961`
Query reference	OH1004
Location	Chr04:4321998-4325046 (-)
Description	Similar to BHLH35: Transcription factor bHLH35 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_017961 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 19 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g57150`	Transcription factor bHLH35.	No verified direct reference in this release
`At4g29930`	Transcription factor bHLH27.	No verified direct reference in this release
`At2g16910`	Transcription factor.	No verified direct reference in this release
`At2g28160`	Transcription factor.	The essential basic helix-loop-helix protein FIT1 is required for the iron deficiency response.2004 · DOI: 10.1105/tpc.104.024315 AtbHLH29 of Arabidopsis thaliana is a functional ortholog of tomato FER involved in controlling iron acquisition in strategy I plants.2005 · DOI: 10.1038/sj.cr.7290331

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0301500`	Transcription factor involved in phosphate starvation response.	RERJ1, a jasmonic acid-responsive gene from rice, encodes a basic helix-loop-helix protein.2004 · DOI: 10.1016/j.bbrc.2004.10.126 Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice.2013 · DOI: 10.1007/s00709-012-0400-z OsbHLH6 interacts with OsSPX4 and regulates the phosphate starvation response in rice.2021 · DOI: 10.1111/tpj.15061

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.814; coverage=97.925; evalue=1.24e-73; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.814; coverage=97.925; evalue=1.24e-73; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009555	pollen development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.333; coverage=74.689; evalue=9.32e-21; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009867	jasmonic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.605; coverage=89.212; evalue=2.59e-38; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010039	response to iron ion	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.72; coverage=77.178; evalue=4.02e-17; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034756	regulation of iron ion transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.72; coverage=77.178; evalue=4.02e-17; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048658	anther wall tapetum development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.333; coverage=74.689; evalue=9.32e-21; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048831	regulation of shoot system development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.605; coverage=89.212; evalue=2.59e-38; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0055062	phosphate ion homeostasis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.605; coverage=89.212; evalue=2.59e-38; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080040	positive regulation of cellular response to phosphate starvation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.605; coverage=89.212; evalue=2.59e-38; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.814; coverage=97.925; evalue=1.24e-73; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.605; coverage=89.212; evalue=2.59e-38; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.605; coverage=89.212; evalue=2.59e-38; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.333; coverage=74.689; evalue=9.32e-21; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003682	chromatin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.333; coverage=74.689; evalue=9.32e-21; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.814; coverage=97.925; evalue=1.24e-73; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042803	protein homodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.605; coverage=89.212; evalue=2.59e-38; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.814; coverage=97.925; evalue=1.24e-73; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046983	protein dimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.814; coverage=97.925; evalue=1.24e-73; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G16910	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.333; coverage=74.689; evalue=9.32e-21	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G28160	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.72; coverage=77.178; evalue=4.02e-17	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G29930	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=46.188; coverage=92.531; evalue=2.06e-58	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G57150	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.814; coverage=97.925; evalue=1.24e-73	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os04g0301500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.605; coverage=89.212; evalue=2.59e-38	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4335417	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.605; coverage=89.212; evalue=2.59e-38	UniProtKB/Swiss-Prot DAT 2026 current_release