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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_017948
Query referenceOH1004
LocationChr04:4170708-4171926 (-)
DescriptionSimilar to GCD1: Protein GAMETE CELL DEFECTIVE 1%2C mitochondrial (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_017948 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 18 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g62270 Essential for fertility (male and female gametophyte functions and development).
Mitochondrial GCD1 dysfunction reveals reciprocal cell-to-cell signaling during the maturation of Arabidopsis female gametes.2012 · DOI: 10.1016/j.devcel.2012.09.011

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0801700 Essential for fertility (male and female gametophyte functions and development).
OsGCD1 is essential for rice fertility and required for embryo dorsal-ventral pattern formation and endosperm development.2017 · DOI: 10.1111/nph.14625
The stereotyped positioning of the generative cell associated with vacuole dynamics is not required for male gametogenesis in rice pollen.2018 · DOI: 10.1111/nph.15038
UniProt: A2WW22 Essential for fertility (male and female gametophyte functions and development) (By similarity). No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0007006mitochondrial membrane organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.344; coverage=87.853; evalue=2.63e-122; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007033vacuole organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.733; coverage=90.96; evalue=6.43e-136; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007154cell communicationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.344; coverage=87.853; evalue=2.63e-122; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009555pollen developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.733; coverage=90.96; evalue=6.43e-136; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009793embryo development ending in seed dormancyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.733; coverage=90.96; evalue=6.43e-136; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009846pollen germinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.733; coverage=90.96; evalue=6.43e-136; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009960endosperm developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.733; coverage=90.96; evalue=6.43e-136; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010342endosperm cellularizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.733; coverage=90.96; evalue=6.43e-136; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010468regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.733; coverage=90.96; evalue=6.43e-136; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010581regulation of starch biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.733; coverage=90.96; evalue=6.43e-136; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043067regulation of programmed cell deathBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.733; coverage=90.96; evalue=6.43e-136; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048229gametophyte developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.733; coverage=90.96; evalue=6.43e-136; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048868pollen tube developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.344; coverage=87.853; evalue=2.63e-122; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051647nucleus localizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.733; coverage=90.96; evalue=6.43e-136; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.733; coverage=90.96; evalue=6.43e-136; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005840ribosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.344; coverage=87.853; evalue=2.63e-122; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.344; coverage=87.853; evalue=2.63e-122; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990904ribonucleoprotein complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.344; coverage=87.853; evalue=2.63e-122; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G62270KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.344; coverage=87.853; evalue=2.63e-122UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0801700KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.733; coverage=90.96; evalue=6.43e-136UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4327965KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.733; coverage=90.96; evalue=6.43e-136UniProtKB/Swiss-Prot DAT 2026 current_release