Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_017681 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:156747044-156752525 (+) |
| Description | Similar to FPA: Flowering time control protein FPA (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_017681 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 26 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g43410 |
Plays a role in the regulation of flowering time in the autonomous flowering pathway by decreasing FLOWERING LOCUS C mRNA levels. | No verified direct reference in this release |
At5g54900 |
Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.884; coverage=11.685; evalue=7.45e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000395 | mRNA 5'-splice site recognition | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=27.511; coverage=31.114; evalue=4.49e-08; UniProt GO evidence=IC:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000398 | mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=27.511; coverage=31.114; evalue=4.49e-08; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001510 | RNA methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.884; coverage=11.685; evalue=7.45e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.879; coverage=35.87; evalue=8.13e-40; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.884; coverage=11.685; evalue=7.45e-08; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006406 | mRNA export from nucleus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.884; coverage=11.685; evalue=7.45e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008380 | RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.884; coverage=11.685; evalue=7.45e-08; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009553 | embryo sac development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.879; coverage=35.87; evalue=8.13e-40; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009908 | flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.879; coverage=35.87; evalue=8.13e-40; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009911 | positive regulation of flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.879; coverage=35.87; evalue=8.13e-40; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010228 | vegetative to reproductive phase transition of meristem | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.879; coverage=35.87; evalue=8.13e-40; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030154 | cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.879; coverage=35.87; evalue=8.13e-40; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031048 | regulatory ncRNA-mediated heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.879; coverage=35.87; evalue=8.13e-40; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.879; coverage=35.87; evalue=8.13e-40; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.879; coverage=35.87; evalue=8.13e-40; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005635 | nuclear envelope | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.884; coverage=11.685; evalue=7.45e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.884; coverage=11.685; evalue=7.45e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005685 | U1 snRNP | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=27.511; coverage=31.114; evalue=4.49e-08; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=27.511; coverage=31.114; evalue=4.49e-08; UniProt GO evidence=HDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.884; coverage=11.685; evalue=7.45e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036396 | RNA N6-methyladenosine methyltransferase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.884; coverage=11.685; evalue=7.45e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071004 | U2-type prespliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=27.511; coverage=31.114; evalue=4.49e-08; UniProt GO evidence=ISO:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.879; coverage=35.87; evalue=8.13e-40; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.884; coverage=11.685; evalue=7.45e-08; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030619 | U1 snRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=27.511; coverage=31.114; evalue=4.49e-08; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G43410 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.879; coverage=35.87; evalue=8.13e-40 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:29890 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.884; coverage=11.685; evalue=7.45e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2540865 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=27.511; coverage=31.114; evalue=4.49e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release |