Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_017609`
Query reference	OH1004
Location	Chr03:155140510-155145283 (-)
Description	Similar to EDM2: Protein ENHANCED DOWNY MILDEW 2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_017609 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 37 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g55390`	Cellular antisilencing factor and regulator of genome DNA methylation patterns involved in the regulation of chromatin states.	EDM2 is required for RPP7-dependent disease resistance in Arabidopsis and affects RPP7 transcript levels.2007 · DOI: 10.1111/j.1365-313x.2006.02999.x The Arabidopsis defense component EDM2 affects the floral transition in an FLC-dependent manner.2010 · DOI: 10.1111/j.1365-313x.2010.04169.x Co-option of EDM2 to distinct regulatory modules in Arabidopsis thaliana development.2010 · DOI: 10.1186/1471-2229-10-203 EMSY-like genes are required for full RPP7-mediated race-specific immunity and basal defense in Arabidopsis.2011 · DOI: 10.1094/mpmi-05-11-0123 Mutations in EDM2 selectively affect silencing states of transposons and induce plant developmental plasticity.2013 · DOI: 10.1038/srep01701 Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.2013 · DOI: 10.1371/journal.pone.0067987 Arabidopsis EDM2 promotes IBM1 distal polyadenylation and regulates genome DNA methylation patterns.2014 · DOI: 10.1073/pnas.1320106110 Demethylation of ERECTA receptor genes by IBM1 histone demethylase affects stomatal development.2016 · DOI: 10.1242/dev.129932 A protein complex regulates RNA processing of intronic heterochromatin-containing genes in Arabidopsis .2017 · DOI: 10.1073/pnas.1710683114 The Arabidopsis RRM domain protein EDM3 mediates race-specific disease resistance by controlling H3K9me2-dependent alternative polyadenylation of RPP7 immune receptor transcripts.2019 · DOI: 10.1111/tpj.14148 The Arabidopsis PHD-finger protein EDM2 has multiple roles in balancing NLR immune receptor gene expression.2020 · DOI: 10.1371/journal.pgen.1008993 Genome-wide distribution and functions of the AAE complex in epigenetic regulation in Arabidopsis.2021 · DOI: 10.1111/jipb.13068

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006338	chromatin remodeling	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.288; coverage=15.856; evalue=2e-14; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007165	signal transduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009911	positive regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010228	vegetative to reproductive phase transition of meristem	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010440	stomatal lineage progression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031347	regulation of defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031452	negative regulation of heterochromatin formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032259	methylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.919; coverage=15.661; evalue=1.22e-14; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0040029	epigenetic regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.129; coverage=15.856; evalue=5.25e-13; UniProt GO evidence=IDA:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.919; coverage=15.661; evalue=1.22e-14; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050832	defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0060147	regulation of post-transcriptional gene silencing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090436	leaf pavement cell development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0141005	transposable element silencing by heterochromatin formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902290	positive regulation of defense response to oomycetes	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000024	regulation of leaf development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000785	chromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.919; coverage=15.661; evalue=1.22e-14; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000792	heterochromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.919; coverage=15.661; evalue=1.22e-14; UniProt GO evidence=IDA:HPA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032991	protein-containing complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042800	histone H3K4 methyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.129; coverage=15.856; evalue=5.25e-13; UniProt GO evidence=IDA:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046975	histone H3K36 methyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.919; coverage=15.661; evalue=1.22e-14; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046976	histone H3K27 methyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.129; coverage=15.856; evalue=5.25e-13; UniProt GO evidence=IDA:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0062072	histone H3K9me2/3 reader activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IDA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140537	transcription regulator activator activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.919; coverage=15.661; evalue=1.22e-14; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140566	histone reader activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140938	histone H3 methyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.919; coverage=15.661; evalue=1.22e-14; UniProt GO evidence=TAS:Reactome	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140946	histone H3K4 dimethyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.919; coverage=15.661; evalue=1.22e-14; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140951	histone H3K27 trimethyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.919; coverage=15.661; evalue=1.22e-14; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140952	histone H3K27 dimethyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.919; coverage=15.661; evalue=1.22e-14; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G55390	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=30.156; evalue=2.34e-119	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ddi:DDB_G0268158	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.288; coverage=15.856; evalue=2e-14	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	hsa:54904	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.919; coverage=15.661; evalue=1.22e-14	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	mmu:234135	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.129; coverage=15.856; evalue=5.25e-13	UniProtKB/Swiss-Prot DAT 2026 current_release