Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_017552`
Query reference	OH1004
Location	Chr03:153116008-153121758 (-)
Description	Similar to rhp16: ATP-dependent helicase rhp16 (Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX%3D284812)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_017552 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 23 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g20010`	Probable helicase-like transcription factor involved in transcriptional gene silencing.	SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis.2014 · DOI: 10.1038/cr.2014.156 SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation.2014 · DOI: 10.1073/pnas.1420515111
`At5g43530`	Possesses intrinsic ATP-dependent nucleosome-remodeling activity.	A homolog of ScRAD5 is involved in DNA repair and homologous recombination in Arabidopsis.2008 · DOI: 10.1104/pp.108.116806
`At5g22750`	Functions in error-free postreplication DNA repair or DNA- damage tolerance (DTT) pathway.	A homolog of ScRAD5 is involved in DNA repair and homologous recombination in Arabidopsis.2008 · DOI: 10.1104/pp.108.116806 RAD5A, RECQ4A, and MUS81 have specific functions in homologous recombination and define different pathways of DNA repair in Arabidopsis thaliana.2010 · DOI: 10.1105/tpc.110.078568 RAD5a and REV3 function in two alternative pathways of DNA-damage tolerance in Arabidopsis.2011 · DOI: 10.1016/j.dnarep.2011.04.009 AtRAD5A is a DNA translocase harboring a HIRAN domain which confers binding to branched DNA structures and is required for DNA repair in vivo.2016 · DOI: 10.1111/tpj.13283

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000715	nucleotide-excision repair, DNA damage recognition	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141; UniProt GO evidence=IDA:SGD	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000720	pyrimidine dimer repair by nucleotide-excision repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=IMP:PomBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006281	DNA repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.663; coverage=100.112; evalue=2.5e-94; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006289	nucleotide-excision repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=IMP:PomBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.663; coverage=100.112; evalue=2.5e-94; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141; UniProt GO evidence=IDA:ComplexPortal	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008104	intracellular protein localization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141; UniProt GO evidence=IDA:SGD	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009411	response to UV	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141; UniProt GO evidence=IDA:ComplexPortal	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034644	cellular response to UV	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141; UniProt GO evidence=IDA:SGD	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070911	global genome nucleotide-excision repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141; UniProt GO evidence=IDA:ComplexPortal	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080188	gene silencing by siRNA-directed DNA methylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.663; coverage=100.112; evalue=2.5e-94; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000113	nucleotide-excision repair factor 4 complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=IPI:PomBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=HDA:PomBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031463	Cul3-RING ubiquitin ligase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141; UniProt GO evidence=IDA:SGD	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=IC:PomBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004386	helicase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=ISM:PomBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008094	ATP-dependent activity, acting on DNA	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=ISM:PomBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016787	hydrolase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016887	ATP hydrolysis activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=IC:PomBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0061630	ubiquitin protein ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=ISM:PomBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140658	ATP-dependent chromatin remodeler activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=NAS:PomBase	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G20010	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.663; coverage=100.112; evalue=2.5e-94	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	sce:YBR114W	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	spo:2538860	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153	UniProtKB/Swiss-Prot DAT 2026 current_release