Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_016940 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:137309457-137311865 (+) |
| Description | Similar to At2g37990: Ribosome biogenesis regulatory protein homolog (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_016940 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 13 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g37990 |
Involved in ribosome biogenesis. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000027 | ribosomal large subunit assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.462; coverage=96.154; evalue=1.96e-41; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000447 | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.581; coverage=91.716; evalue=7.98e-139; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007080 | mitotic metaphase chromosome alignment | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.462; coverage=96.154; evalue=1.96e-41; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042273 | ribosomal large subunit biogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.581; coverage=91.716; evalue=7.98e-139; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902570 | protein localization to nucleolus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.462; coverage=96.154; evalue=1.96e-41; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000794 | condensed nuclear chromosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.462; coverage=96.154; evalue=1.96e-41; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.581; coverage=91.716; evalue=7.98e-139; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.832; coverage=98.817; evalue=7.59e-41; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.581; coverage=91.716; evalue=7.98e-139; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.832; coverage=98.817; evalue=7.59e-41; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030687 | preribosome, large subunit precursor | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.581; coverage=91.716; evalue=7.98e-139; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.408; coverage=72.485; evalue=3.39e-40; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008097 | 5S rRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.462; coverage=96.154; evalue=1.96e-41; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G37990 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.581; coverage=91.716; evalue=7.98e-139 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:510956 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.462; coverage=96.154; evalue=1.96e-41 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:23212 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.408; coverage=72.485; evalue=3.39e-40 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:59014 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.832; coverage=98.817; evalue=7.59e-41 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:297784 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.918; coverage=71.893; evalue=2.61e-40 | UniProtKB/Swiss-Prot DAT 2026 current_release |