Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_016557 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:126904628-126906121 (+) |
| Description | Similar to At3g15140: Uncharacterized exonuclease domain-containing protein At3g15140 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_016557 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 23 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g15140 |
Uncharacterized exonuclease domain-containing protein At3g15140. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000460 | maturation of 5.8S rRNA | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.66; coverage=63.284; evalue=5.79e-28; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000467 | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=77.612; evalue=2.52e-127; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031047 | regulatory ncRNA-mediated gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.66; coverage=63.284; evalue=5.79e-28; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031125 | rRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.66; coverage=63.284; evalue=5.79e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035194 | regulatory ncRNA-mediated post-transcriptional gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=77.612; evalue=2.52e-127; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060906 | negative regulation of regulatory ncRNA-mediated heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=77.612; evalue=2.52e-127; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.66; coverage=63.284; evalue=5.79e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.66; coverage=63.284; evalue=5.79e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=77.612; evalue=2.52e-127; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=77.612; evalue=2.52e-127; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.885; coverage=91.045; evalue=3.16e-28; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=77.612; evalue=2.52e-127; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071204 | histone pre-mRNA 3'end processing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.66; coverage=63.284; evalue=5.79e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000175 | 3'-5'-RNA exonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=77.612; evalue=2.52e-127; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003676 | nucleic acid binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=77.612; evalue=2.52e-127; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.885; coverage=91.045; evalue=7.23e-28; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008408 | 3'-5' exonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.66; coverage=63.284; evalue=5.79e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008859 | exoribonuclease II activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.66; coverage=63.284; evalue=5.79e-28; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016891 | RNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=77.612; evalue=2.52e-127; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019843 | rRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.66; coverage=63.284; evalue=5.79e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043022 | ribosome binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.66; coverage=63.284; evalue=5.79e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=77.612; evalue=2.52e-127; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071207 | histone pre-mRNA stem-loop binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.66; coverage=63.284; evalue=5.79e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G15140 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=77.612; evalue=2.52e-127 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:540516 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.885; coverage=91.045; evalue=3.16e-28 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:79033 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.885; coverage=91.045; evalue=7.23e-28 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:67276 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.918; coverage=61.791; evalue=1.01e-27 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:361159 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.66; coverage=63.284; evalue=5.79e-28 | UniProtKB/Swiss-Prot DAT 2026 current_release |