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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_016166
Query referenceOH1004
LocationChr03:112941472-112948034 (+)
DescriptionSimilar to MSH5: DNA mismatch repair protein MSH5 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_016166 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 21 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g20475 Involved in meiotic recombination in association with MSH4.
AtMSH5 partners AtMSH4 in the class I meiotic crossover pathway in Arabidopsis thaliana, but is not required for synapsis.2008 · DOI: 10.1111/j.1365-313x.2008.03470.x
The Arabidopsis MutS homolog AtMSH5 is required for normal meiosis.2008 · DOI: 10.1038/cr.2008.44
SHOC1, an XPF endonuclease-related protein, is essential for the formation of class I meiotic crossovers.2008 · DOI: 10.1016/j.cub.2008.08.041
SHOC1 and PTD form an XPF-ERCC1-like complex that is required for formation of class I crossovers.2011 · DOI: 10.1242/jcs.088229

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0498300 Involved in meiotic recombination.
The role of OsMSH5 in crossover formation during rice meiosis.2013 · DOI: 10.1093/mp/sss145

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000712resolution of meiotic recombination intermediatesBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.457; coverage=98.515; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006298mismatch repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.457; coverage=98.515; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007127meiosis IBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.292; coverage=100.743; evalue=2.54e-115; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007129homologous chromosome pairing at meiosisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.292; coverage=100.743; evalue=2.54e-115; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007131reciprocal meiotic recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.362; coverage=98.515; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007292female gamete generationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.292; coverage=100.743; evalue=2.54e-115; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010777meiotic mismatch repair involved in reciprocal meiotic recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.362; coverage=98.515; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045143homologous chromosome segregationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.362; coverage=98.515; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051026chiasma assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.362; coverage=98.515; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000794condensed nuclear chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.362; coverage=98.515; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000795synaptonemal complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.292; coverage=100.743; evalue=2.54e-115; UniProt GO evidence=IDA:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.362; coverage=98.515; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.292; coverage=100.743; evalue=2.54e-115; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005694chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.457; coverage=98.515; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.362; coverage=98.515; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043073germ cell nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.362; coverage=98.515; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990391DNA repair complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.292; coverage=100.743; evalue=2.54e-115; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003690double-stranded DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.362; coverage=98.515; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.362; coverage=98.515; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030983mismatched DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.362; coverage=98.515; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140664ATP-dependent DNA damage sensor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.362; coverage=98.515; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G20475KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.362; coverage=98.515; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os05g0498300KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.457; coverage=98.515; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:4439KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.595; coverage=100.619; evalue=1.68e-114UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:17687KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.292; coverage=100.743; evalue=2.54e-115UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGrno:294252KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.472; coverage=100.619; evalue=5.85e-112UniProtKB/Swiss-Prot DAT 2026 current_release