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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_015767
Query referenceOH1004
LocationChr03:83487602-83489838 (-)
DescriptionSimilar to SHM2: Serine hydroxymethyltransferase 2%2C mitochondrial (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_015767 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 29 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g26780 Functions outside the photorespiratory pathway in catalyzing the interconversion of serine and glycine with the conversion of tetrahydrofolate (THF) into 5,10-methylene-THF.
The photorespiratory Arabidopsis shm1 mutant is deficient in SHM1.2006 · DOI: 10.1104/pp.105.071399
The presequence of Arabidopsis serine hydroxymethyltransferase SHM2 selectively prevents import into mesophyll mitochondria.2011 · DOI: 10.1104/pp.111.184564
At4g37930 Functions in the photorespiratory pathway in catalyzing the interconversion of serine and glycine.
Arabidopsis SHMT1, a serine hydroxymethyltransferase that functions in the photorespiratory pathway influences resistance to biotic and abiotic stress.2005 · DOI: 10.1111/j.1365-313x.2004.02311.x
The photorespiratory Arabidopsis shm1 mutant is deficient in SHM1.2006 · DOI: 10.1104/pp.105.071399
The presequence of Arabidopsis serine hydroxymethyltransferase SHM2 selectively prevents import into mesophyll mitochondria.2011 · DOI: 10.1104/pp.111.184564
Ubiquitin-specific protease16 modulates salt tolerance in Arabidopsis by regulating Na(+)/H(+) antiport activity and serine hydroxymethyltransferase stability.2012 · DOI: 10.1105/tpc.112.106393

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006544glycine metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.164; coverage=37.888; evalue=3.21e-31; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006563L-serine metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.164; coverage=37.888; evalue=3.21e-31; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007623circadian rhythmBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.164; coverage=37.888; evalue=3.38e-31; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009409response to coldBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.164; coverage=37.888; evalue=3.38e-31; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009416response to light stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.164; coverage=37.888; evalue=3.38e-31; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009626plant-type hypersensitive responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.164; coverage=37.888; evalue=3.38e-31; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009853photorespirationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.164; coverage=37.888; evalue=3.38e-31; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019264glycine biosynthetic process from L-serineBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.164; coverage=37.888; evalue=3.21e-31; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035999tetrahydrofolate interconversionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.164; coverage=37.888; evalue=3.21e-31; UniProt GO evidence=IEA:UniProtKB-UniPathwayUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046653tetrahydrofolate metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.164; coverage=37.888; evalue=3.21e-31; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.164; coverage=37.888; evalue=3.38e-31; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.164; coverage=37.888; evalue=3.21e-31; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005759mitochondrial matrixCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.164; coverage=37.888; evalue=3.38e-31; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.164; coverage=37.888; evalue=3.38e-31; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.164; coverage=37.888; evalue=3.38e-31; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.164; coverage=37.888; evalue=3.21e-31; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009534chloroplast thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.164; coverage=37.888; evalue=3.38e-31; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009536plastidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.164; coverage=37.888; evalue=3.21e-31; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.164; coverage=37.888; evalue=3.38e-31; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010319stromuleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.164; coverage=37.888; evalue=3.38e-31; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0022626cytosolic ribosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.164; coverage=37.888; evalue=3.38e-31; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045271respiratory chain complex ICellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.164; coverage=37.888; evalue=3.21e-31; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048046apoplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.164; coverage=37.888; evalue=3.38e-31; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.164; coverage=37.888; evalue=3.38e-31; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004372glycine hydroxymethyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.164; coverage=37.888; evalue=3.21e-31; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008266poly(U) RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.164; coverage=37.888; evalue=3.38e-31; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.164; coverage=37.888; evalue=3.21e-31; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030170pyridoxal phosphate bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.164; coverage=37.888; evalue=3.21e-31; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0050897cobalt ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.164; coverage=37.888; evalue=3.21e-31; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G37930KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.164; coverage=37.888; evalue=3.38e-31UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G26780KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.164; coverage=37.888; evalue=3.21e-31UniProtKB/Swiss-Prot DAT 2026 current_release