Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_015717 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:81750512-81755199 (+) |
| Description | Similar to IDD4: Protein indeterminate-domain 4%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_015717 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 18 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g02080 |
Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). | No verified direct reference in this release |
At2g02070 |
Transcription factor acting as a positive regulator of the starch synthase SS4. | |
At1g14580 |
Probable transcription factor. | No verified direct reference in this release |
At3g50700 |
Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. | No verified direct reference in this release |
At5g66730 |
Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0002221 | pattern recognition receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.772; coverage=87.742; evalue=6.7e-120; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.772; coverage=87.742; evalue=6.7e-120; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.721; coverage=99.355; evalue=1.21e-118; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008356 | asymmetric cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.772; coverage=87.742; evalue=6.7e-120; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009740 | gibberellic acid mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=77.049; coverage=29.516; evalue=7.5e-103; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009937 | regulation of gibberellic acid mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=77.049; coverage=29.516; evalue=7.5e-103; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010029 | regulation of seed germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.956; coverage=29.516; evalue=4.28e-101; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010336 | gibberellic acid homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=77.049; coverage=29.516; evalue=7.5e-103; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010431 | seed maturation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.956; coverage=29.516; evalue=4.28e-101; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.772; coverage=87.742; evalue=6.7e-120; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048364 | root development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.772; coverage=87.742; evalue=6.7e-120; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.772; coverage=87.742; evalue=6.7e-120; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.772; coverage=87.742; evalue=6.7e-120; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.721; coverage=99.355; evalue=1.21e-118; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=77.049; coverage=29.516; evalue=7.5e-103; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003700 | DNA-binding transcription factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.772; coverage=87.742; evalue=6.7e-120; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.772; coverage=87.742; evalue=6.7e-120; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043565 | sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.772; coverage=87.742; evalue=6.7e-120; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G14580 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=66.102; coverage=38.065; evalue=7.83e-107 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G02070 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.721; coverage=99.355; evalue=1.21e-118 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G02080 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.772; coverage=87.742; evalue=6.7e-120 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G50700 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=77.049; coverage=29.516; evalue=7.5e-103 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G66730 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.956; coverage=29.516; evalue=4.28e-101 | UniProtKB/Swiss-Prot DAT 2026 current_release |