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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_014701
Query referenceOH1004
LocationChr03:55094137-55097763 (-)
DescriptionSimilar to HDA8: Histone deacetylase 8 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_014701 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 14 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g08460 Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os12g0182700 Involved in the regulation of melatonin biosynthesis by catalyzing the deacetylation of N-acetylserotonin to produce serotonin.
Rice histone deacetylase 10 and Arabidopsis histone deacetylase 14 genes encode N-acetylserotonin deacetylase, which catalyzes conversion of N-acetylserotonin into serotonin, a reverse reaction for melatonin biosynthesis in plants.2018 · DOI: 10.1111/jpi.12460

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.161; coverage=67.391; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030186melatonin metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.124; coverage=62.862; evalue=2.38e-44; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0040029epigenetic regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.161; coverage=67.391; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000118histone deacetylase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.124; coverage=62.862; evalue=2.38e-44; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.161; coverage=67.391; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.161; coverage=67.391; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.124; coverage=62.862; evalue=2.38e-44; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.124; coverage=62.862; evalue=2.38e-44; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004407histone deacetylase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.161; coverage=67.391; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.161; coverage=67.391; evalue=0.0; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016787hydrolase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.873; coverage=57.065; evalue=2.68e-58; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019213deacetylase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.124; coverage=62.862; evalue=2.38e-44; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.873; coverage=57.065; evalue=2.68e-58; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0141221histone deacetylase activity, hydrolytic mechanismMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.161; coverage=67.391; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGafu:AF_0130KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.873; coverage=57.065; evalue=2.68e-58UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G08460KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.161; coverage=67.391; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os12g0182700KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.124; coverage=62.862; evalue=2.38e-44UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4351682KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.124; coverage=62.862; evalue=2.38e-44UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGpae:PA3774KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.974; coverage=56.522; evalue=5.28e-57UniProtKB/Swiss-Prot DAT 2026 current_release