Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_014337`
Query reference	OH1004
Location	Chr03:46550694-46552396 (-)
Description	Similar to JMJ16: Putative lysine-specific demethylase JMJ16 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_014337 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 29 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08620`	Functions as a histone H3 'Lys-4' (H3K4me) demethylase involved in the negative regulation of gene expression.	The Histone H3K4 Demethylase JMJ16 Represses Leaf Senescence in Arabidopsis.2019 · DOI: 10.1105/tpc.18.00693 Cell-type-dependent histone demethylase specificity promotes meiotic chromosome condensation in Arabidopsis.2020 · DOI: 10.1038/s41477-020-0697-0
`At2g34880`	Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3 with a specific activity for H3K4me3.	Overexpression of a histone H3K4 demethylase, JMJ15, accelerates flowering time in Arabidopsis.2012 · DOI: 10.1007/s00299-012-1249-5 Over-expression of histone H3K4 demethylase gene JMJ15 enhances salt tolerance in Arabidopsis.2014 · DOI: 10.3389/fpls.2014.00290
`At1g30810`	Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3 with a specific activity for H3K4me3 and H3K4me2.	A companion cell-dominant and developmentally regulated H3K4 demethylase controls flowering time in Arabidopsis via the repression of FLC expression.2012 · DOI: 10.1371/journal.pgen.1002664

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0196500`	Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3 with a specific activity for H3K4me3, H3K4me2 and H3K4me1.	Control of transposon activity by a histone H3K4 demethylase in rice.2013 · DOI: 10.1073/pnas.1217020110 Structural basis of a histone H3 lysine 4 demethylase required for stem elongation in rice.2013 · DOI: 10.1371/journal.pgen.1003239

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006338	chromatin remodeling	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009555	pollen development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.974; coverage=12.381; evalue=6.38e-07; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.974; coverage=12.381; evalue=6.38e-07; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009909	regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.974; coverage=12.381; evalue=6.38e-07; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010032	meiotic chromosome condensation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010468	regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010628	positive regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0040010	positive regulation of growth rate	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.103; coverage=55.238; evalue=2.39e-27; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045814	negative regulation of gene expression, epigenetic	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.974; coverage=12.381; evalue=6.38e-07; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048573	photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.037; coverage=25.714; evalue=5.12e-06; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048589	developmental growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0099402	plant organ development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900056	negative regulation of leaf senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901002	positive regulation of response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.974; coverage=12.381; evalue=6.38e-07; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902074	response to salt	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.974; coverage=12.381; evalue=6.38e-07; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1903409	reactive oxygen species biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1905821	positive regulation of chromosome condensation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000785	chromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.037; coverage=25.714; evalue=5.12e-06; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008198	ferrous iron binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.103; coverage=55.238; evalue=2.39e-27; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032183	SUMO binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032453	histone H3K4 demethylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.103; coverage=55.238; evalue=2.39e-27; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032454	histone H3K9 demethylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034647	histone H3K4me/H3K4me2/H3K4me3 demethylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G08620	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.708; coverage=54.286; evalue=5.64e-35	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G30810	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.037; coverage=25.714; evalue=5.12e-06	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G34880	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.974; coverage=12.381; evalue=6.38e-07	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os05g0196500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.103; coverage=55.238; evalue=2.39e-27	UniProtKB/Swiss-Prot DAT 2026 current_release