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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_014191
Query referenceOH1004
LocationChr03:43382797-43390889 (+)
DescriptionSimilar to IDM2: Increased DNA methylation 2 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_014191 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 13 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g54840 Prevents DNA hypermethylation and transcriptional silencing of transgenes and of some endogenous genes.
REPRESSOR OF SILENCING5 Encodes a Member of the Small Heat Shock Protein Family and Is Required for DNA Demethylation in Arabidopsis.2014 · DOI: 10.1105/tpc.114.126730
Regulation of active DNA demethylation by an α-crystallin domain protein in Arabidopsis.2014 · DOI: 10.1016/j.molcel.2014.06.008
At2g36810 Involved in inflorescence stems gravitropism, by modulating vacuolar membrane (VMs) dynamics in gravity-sensing cells (e.g. endodermal cells) during the amyloplast sedimentation process.
A unique HEAT repeat-containing protein SHOOT GRAVITROPISM6 is involved in vacuolar membrane dynamics in gravity-sensing cells of Arabidopsis inflorescence stem.2014 · DOI: 10.1093/pcp/pcu020
Mutations in the SGR4, SGR5 and SGR6 loci of Arabidopsis thaliana alter the shoot gravitropism.1997 · DOI: 10.1093/oxfordjournals.pcp.a029201
At1g20870 Acts as an anti-silencing factor that prevents DNA hypermethylation and gene repression.
The methyl-CpG-binding protein MBD7 facilitates active DNA demethylation to limit DNA hyper-methylation and transcriptional gene silencing.2015 · DOI: 10.1016/j.molcel.2015.01.009

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006338chromatin remodelingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.222; coverage=8.272; evalue=2.28e-09; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.222; coverage=8.272; evalue=2.28e-09; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007035vacuolar acidificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.939; coverage=12.132; evalue=2.32e-07; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009630gravitropismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.444; coverage=8.272; evalue=3.08e-08; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009660amyloplast organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.444; coverage=8.272; evalue=3.08e-08; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009959negative gravitropismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.444; coverage=8.272; evalue=3.08e-08; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032880regulation of protein localizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.939; coverage=12.132; evalue=2.32e-07; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070070proton-transporting V-type ATPase complex assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.939; coverage=12.132; evalue=2.32e-07; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.222; coverage=8.272; evalue=2.28e-09; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.222; coverage=8.272; evalue=2.28e-09; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.222; coverage=8.272; evalue=2.28e-09; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009705plant-type vacuole membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.444; coverage=8.272; evalue=3.08e-08; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043291RAVE complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.939; coverage=12.132; evalue=2.32e-07; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G20870KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.347; coverage=45.037; evalue=8.27e-08UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G54840KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.222; coverage=8.272; evalue=2.28e-09UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G36810KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.444; coverage=8.272; evalue=3.08e-08UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:1657KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.254; coverage=13.051; evalue=4.11e-07UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:240283KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.939; coverage=12.132; evalue=2.32e-07UniProtKB/Swiss-Prot DAT 2026 current_release