Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_013977 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:39526422-39527551 (-) |
| Description | Similar to SYP61: Syntaxin-61 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_013977 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 31 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g28490 |
Vesicle trafficking protein that functions in the secretory pathway. |
OSM1/SYP61: a syntaxin protein in Arabidopsis controls abscisic acid-mediated and non-abscisic acid-mediated responses to abiotic stress.2002 · DOI: 10.1105/tpc.006981 YKT6 is a core constituent of membrane fusion machineries at the Arabidopsis trans-Golgi network.2005 · DOI: 10.1016/j.jmb.2005.04.061 Isolation and proteomic analysis of the SYP61 compartment reveal its role in exocytic trafficking in Arabidopsis.2012 · DOI: 10.1038/cr.2011.129
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006886 | intracellular protein transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.667; coverage=106.034; evalue=2.18e-108; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006887 | exocytosis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.667; coverage=106.034; evalue=2.18e-108; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006906 | vesicle fusion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.667; coverage=106.034; evalue=2.18e-108; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007032 | endosome organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.848; coverage=102.155; evalue=6.9e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009738 | abscisic acid-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.667; coverage=106.034; evalue=2.18e-108; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016189 | synaptic vesicle to endosome fusion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.848; coverage=102.155; evalue=6.9e-22; UniProt GO evidence=IDA:SynGO | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016192 | vesicle-mediated transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.848; coverage=102.155; evalue=6.9e-22; UniProt GO evidence=IDA:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032456 | endocytic recycling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.848; coverage=102.155; evalue=6.9e-22; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032880 | regulation of protein localization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.848; coverage=102.155; evalue=6.9e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042147 | retrograde transport, endosome to Golgi | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.848; coverage=102.155; evalue=6.9e-22; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048193 | Golgi vesicle transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.667; coverage=106.034; evalue=2.18e-108; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048278 | vesicle docking | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.667; coverage=106.034; evalue=2.18e-108; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0052324 | plant-type cell wall cellulose biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.667; coverage=106.034; evalue=2.18e-108; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000139 | Golgi membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.848; coverage=102.155; evalue=6.9e-22; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.848; coverage=102.155; evalue=7.5e-22; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005769 | early endosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.848; coverage=102.155; evalue=6.9e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.667; coverage=106.034; evalue=2.18e-108; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005802 | trans-Golgi network | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.667; coverage=106.034; evalue=2.18e-108; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.848; coverage=102.155; evalue=6.9e-22; UniProt GO evidence=IEA:GOC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.848; coverage=102.155; evalue=2.33e-21; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0012505 | endomembrane system | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.667; coverage=106.034; evalue=2.18e-108; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.848; coverage=102.155; evalue=6.9e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030136 | clathrin-coated vesicle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.848; coverage=102.155; evalue=2.33e-21; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031201 | SNARE complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.667; coverage=106.034; evalue=2.18e-108; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032588 | trans-Golgi network membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.667; coverage=106.034; evalue=2.18e-108; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045335 | phagocytic vesicle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.848; coverage=102.155; evalue=6.9e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048471 | perinuclear region of cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.848; coverage=102.155; evalue=6.9e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0055037 | recycling endosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.848; coverage=102.155; evalue=6.9e-22; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0055038 | recycling endosome membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.848; coverage=102.155; evalue=6.9e-22; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000149 | SNARE binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.667; coverage=106.034; evalue=2.18e-108; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005484 | SNAP receptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.667; coverage=106.034; evalue=2.18e-108; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G28490 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.667; coverage=106.034; evalue=2.18e-108 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:10228 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.848; coverage=102.155; evalue=2.33e-21 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:58244 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.848; coverage=102.155; evalue=7.5e-22 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100173487 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=27.848; coverage=102.155; evalue=2.33e-21 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:60562 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.848; coverage=102.155; evalue=6.9e-22 | UniProtKB/Swiss-Prot DAT 2026 current_release |