Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_013736 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:35095382-35099113 (+) |
| Description | Similar to RNU1: U1 small nuclear ribonucleoprotein 70 kDa (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_013736 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 21 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g50670 |
Mediates the splicing of pre-mRNA by binding to the loop I region of U1-snRNA. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000387 | spliceosomal snRNP assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.215; coverage=45.957; evalue=1.23e-46; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000398 | mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.568; coverage=65.68; evalue=2.09e-148; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043484 | regulation of RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.215; coverage=45.957; evalue=1.23e-46; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048026 | positive regulation of mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.215; coverage=45.957; evalue=1.48e-46; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061084 | negative regulation of protein refolding | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.215; coverage=45.957; evalue=1.23e-46; UniProt GO evidence=IDA:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071300 | cellular response to retinoic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.215; coverage=45.957; evalue=1.23e-46; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071356 | cellular response to tumor necrosis factor | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.215; coverage=45.957; evalue=1.23e-46; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071560 | cellular response to transforming growth factor beta stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.215; coverage=45.957; evalue=1.23e-46; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904715 | negative regulation of chaperone-mediated autophagy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.215; coverage=45.957; evalue=1.23e-46; UniProt GO evidence=IDA:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.568; coverage=65.68; evalue=2.09e-148; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.215; coverage=45.957; evalue=1.23e-46; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005681 | spliceosomal complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.215; coverage=45.957; evalue=1.23e-46; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005685 | U1 snRNP | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.568; coverage=65.68; evalue=2.09e-148; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.568; coverage=65.68; evalue=2.09e-148; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043202 | lysosomal lumen | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.215; coverage=45.957; evalue=1.23e-46; UniProt GO evidence=IDA:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071004 | U2-type prespliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.568; coverage=65.68; evalue=2.09e-148; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071011 | precatalytic spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.215; coverage=45.957; evalue=1.48e-46; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.215; coverage=45.957; evalue=1.23e-46; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.568; coverage=65.68; evalue=2.09e-148; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030619 | U1 snRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.568; coverage=65.68; evalue=2.09e-148; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990446 | U1 snRNP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.215; coverage=45.957; evalue=1.23e-46; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G50670 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.568; coverage=65.68; evalue=2.09e-148 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:535113 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.215; coverage=45.957; evalue=3.33e-46 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:6625 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.215; coverage=45.957; evalue=1.23e-46 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:20637 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.215; coverage=45.957; evalue=1.48e-46 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xtr:493488 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.785; coverage=45.957; evalue=5.99e-45 | UniProtKB/Swiss-Prot DAT 2026 current_release |