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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_013354
Query referenceOH1004
LocationChr03:28297522-28298387 (-)
DescriptionSimilar to VPS29: Vacuolar protein sorting-associated protein 29 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_013354 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 22 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g47810 Plays a role in vesicular protein sorting.
The retromer protein VPS29 links cell polarity and organ initiation in plants.2007 · DOI: 10.1016/j.cell.2007.08.040
Differential degradation of PIN2 auxin efflux carrier by retromer-dependent vacuolar targeting.2008 · DOI: 10.1073/pnas.0808073105
The Arabidopsis USL1 controls multiple aspects of development by affecting late endosome morphology.2018 · DOI: 10.1111/nph.15249

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0001881receptor recyclingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.638; coverage=98.947; evalue=1.82e-121; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006623protein targeting to vacuoleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.638; coverage=98.947; evalue=1.82e-121; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006886intracellular protein transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.638; coverage=98.947; evalue=1.82e-121; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006896Golgi to vacuole transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.286; coverage=95.789; evalue=2.3e-89; UniProt GO evidence=ISS:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007034vacuolar transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.638; coverage=98.947; evalue=1.82e-121; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009734auxin-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.638; coverage=98.947; evalue=1.82e-121; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015031protein transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.286; coverage=95.789; evalue=2.35e-89; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032456endocytic recyclingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.835; coverage=95.789; evalue=5.02e-90; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042147retrograde transport, endosome to GolgiBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.638; coverage=98.947; evalue=1.82e-121; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000012regulation of auxin polar transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.638; coverage=98.947; evalue=1.82e-121; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005768endosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.638; coverage=98.947; evalue=1.82e-121; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005769early endosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.286; coverage=95.789; evalue=2.35e-89; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005770late endosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.286; coverage=95.789; evalue=2.35e-89; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005771multivesicular bodyCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.638; coverage=98.947; evalue=1.82e-121; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005794Golgi apparatusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.638; coverage=98.947; evalue=1.82e-121; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.638; coverage=98.947; evalue=1.82e-121; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010008endosome membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.835; coverage=95.789; evalue=5.02e-90; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.638; coverage=98.947; evalue=1.82e-121; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030904retromer complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.638; coverage=98.947; evalue=1.82e-121; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030906retromer, cargo-selective complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.286; coverage=95.789; evalue=2.3e-89; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031902late endosome membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.638; coverage=98.947; evalue=1.82e-121; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.835; coverage=95.789; evalue=5.02e-90; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G47810KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.638; coverage=98.947; evalue=1.82e-121UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGbta:513840KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=64.641; coverage=95.263; evalue=4.17e-89UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdre:573437KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.835; coverage=95.789; evalue=5.02e-90UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:56433KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.286; coverage=95.789; evalue=2.3e-89UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGpon:100190862KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.286; coverage=95.789; evalue=2.35e-89UniProtKB/Swiss-Prot DAT 2026 current_release