Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_013252 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:26615972-26618014 (-) |
| Description | Similar to LPE1: Protein LOW PHOTOSYNTHETIC EFFICIENCY 1%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_013252 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 13 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g46610 |
Required for light-regulated photosystem II (PSII) biogenesis and grana thylakoids formation by binding to the 5' UTR of PSII subunit mRNAs (e.g. psbJ, psbN and psbA) in a light-dependent manner through a redox-based mechanism, and facilitating the association of HCF173 with target mRNAs, which encodes PSII reaction center proteins (e.g. J, N and D1), thus regulating its expression by modulating ribosome loading. | |
At1g63080 |
Pentatricopeptide repeat-containing protein At1g63080, mitochondrial. | No verified direct reference in this release |
At1g62930 |
Pentatricopeptide repeat-containing protein At1g62930, chloroplastic. | No verified direct reference in this release |
At1g09900 |
Pentatricopeptide repeat-containing protein At1g09900. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.121; coverage=76.324; evalue=2.05e-28; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006413 | translational initiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=99.118; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009416 | response to light stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=99.118; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010207 | photosystem II assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=99.118; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032544 | plastid translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=99.118; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=99.118; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=99.118; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009535 | chloroplast thylakoid membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=99.118; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=99.118; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=99.118; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=99.118; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008494 | translation activator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=99.118; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043022 | ribosome binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=99.118; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G62930 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.121; coverage=76.324; evalue=2.05e-28 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G63080 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.682; coverage=78.676; evalue=5.45e-29 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G46610 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=99.118; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |