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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_012655
Query referenceOH1004
LocationChr03:16350786-16352343 (+)
DescriptionSimilar to NFYB8: Nuclear transcription factor Y subunit B-8 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_012655 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 11 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g37060 Component of the NF-Y/HAP transcription factor complex. No verified direct reference in this release
At3g53340 Component of the NF-Y/HAP transcription factor complex. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0573500 Component of the NF-Y/HAP transcription factor complex.
OsHAP3 genes regulate chloroplast biogenesis in rice.2003 · DOI: 10.1046/j.1365-313x.2003.01897.x
Os01g0834400 Component of the NF-Y/HAP transcription factor complex.
OsHAP3 genes regulate chloroplast biogenesis in rice.2003 · DOI: 10.1046/j.1365-313x.2003.01897.x

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.399; coverage=74.089; evalue=3.02e-79; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006357regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.399; coverage=74.089; evalue=3.02e-79; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019760glucosinolate metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.279; coverage=69.636; evalue=1.84e-69; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.399; coverage=74.089; evalue=3.02e-79; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016602CCAAT-binding factor complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.399; coverage=74.089; evalue=3.02e-79; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.279; coverage=69.636; evalue=1.84e-69; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000981DNA-binding transcription factor activity, RNA polymerase II-specificMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.399; coverage=74.089; evalue=3.02e-79; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0001228DNA-binding transcription activator activity, RNA polymerase II-specificMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.399; coverage=74.089; evalue=3.02e-79; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.399; coverage=74.089; evalue=3.02e-79; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043565sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.399; coverage=74.089; evalue=3.02e-79; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046982protein heterodimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.399; coverage=74.089; evalue=3.02e-79; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G37060KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.399; coverage=74.089; evalue=3.02e-79UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G53340KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.279; coverage=69.636; evalue=1.84e-69UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0834400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.975; coverage=65.182; evalue=2.84e-63UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:9268669KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=72.535; coverage=57.49; evalue=1.82e-65UniProtKB/Swiss-Prot DAT 2026 current_release