Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_012273 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:9552020-9553450 (-) |
| Description | Similar to TIF3F1: Eukaryotic translation initiation factor 3 subunit F (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_012273 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 23 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g39990 |
Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0001732 | formation of cytoplasmic translation initiation complex | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.289; coverage=102.105; evalue=4.11e-156; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006413 | translational initiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.289; coverage=102.105; evalue=4.11e-156; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006508 | proteolysis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.376; coverage=95.088; evalue=6.42e-68; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009744 | response to sucrose | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.289; coverage=102.105; evalue=4.11e-156; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009793 | embryo development ending in seed dormancy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.289; coverage=102.105; evalue=4.11e-156; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009846 | pollen germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.289; coverage=102.105; evalue=4.11e-156; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0075522 | IRES-dependent viral translational initiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.376; coverage=95.088; evalue=6.42e-68; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.289; coverage=102.105; evalue=4.11e-156; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.289; coverage=102.105; evalue=4.11e-156; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.289; coverage=102.105; evalue=4.11e-156; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.376; coverage=95.088; evalue=1.03e-67; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005852 | eukaryotic translation initiation factor 3 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.376; coverage=95.088; evalue=6.42e-68; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.289; coverage=102.105; evalue=4.11e-156; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.376; coverage=95.088; evalue=1.03e-67; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016282 | eukaryotic 43S preinitiation complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.289; coverage=102.105; evalue=4.11e-156; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033290 | eukaryotic 48S preinitiation complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.289; coverage=102.105; evalue=4.11e-156; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071541 | eukaryotic translation initiation factor 3 complex, eIF3m | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.289; coverage=102.105; evalue=4.11e-156; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003743 | translation initiation factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.289; coverage=102.105; evalue=4.11e-156; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004843 | cysteine-type deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.376; coverage=95.088; evalue=6.42e-68; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008237 | metallopeptidase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.289; coverage=102.105; evalue=4.11e-156; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031369 | translation initiation factor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.289; coverage=102.105; evalue=4.11e-156; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.376; coverage=95.088; evalue=6.42e-68; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140492 | metal-dependent deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.376; coverage=95.088; evalue=6.42e-68; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G39990 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.289; coverage=102.105; evalue=4.11e-156 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:8665 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.376; coverage=95.088; evalue=1.03e-67 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:66085 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.376; coverage=95.088; evalue=6.42e-68 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ptr:451007 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.376; coverage=95.088; evalue=9.46e-68 | UniProtKB/Swiss-Prot DAT 2026 current_release |