Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_012259`
Query reference	OH1004
Location	Chr03:9249853-9252669 (-)
Description	Similar to COI1: Coronatine-insensitive protein 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_012259 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 24 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g39940`	Required for jasmonate-regulated plant fertility and defense processes, and for coronatine and/or other elicitors perceptions/responses.	Differential gene expression in response to mechanical wounding and insect feeding in Arabidopsis.2000 · DOI: 10.1105/tpc.12.5.707 The SCF(COI1) ubiquitin-ligase complexes are required for jasmonate response in Arabidopsis.2002 · DOI: 10.1105/tpc.003368 A conditionally fertile coi1 allele indicates cross-talk between plant hormone signalling pathways in Arabidopsis thaliana seeds and young seedlings.2002 · DOI: 10.1007/s00425-002-0787-4 Arabidopsis Mutants Selected for Resistance to the Phytotoxin Coronatine Are Male Sterile, Insensitive to Methyl Jasmonate, and Resistant to a Bacterial Pathogen.1994 · DOI: 10.1105/tpc.6.5.751 COI1 links jasmonate signalling and fertility to the SCF ubiquitin-ligase complex in Arabidopsis.2002 · DOI: 10.1046/j.1365-313x.2002.01432.x Characterization of the early response of Arabidopsis to Alternaria brassicicola infection using expression profiling.2003 · DOI: 10.1104/pp.103.022186 Activation of a COI1-dependent pathway in Arabidopsis by Pseudomonas syringae type III effectors and coronatine.2004 · DOI: 10.1111/j.1365-313x.2003.01986.x COI1: an Arabidopsis gene required for jasmonate-regulated defense and fertility.1998 · DOI: 10.1126/science.280.5366.1091

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0449500`	Involved in jasmonate (JA) signaling.	Oryza sativa COI homologues restore jasmonate signal transduction in Arabidopsis coi1-1 mutants.2013 · DOI: 10.1371/journal.pone.0052802
`Os01g0853400`	Involved in jasmonate (JA) signaling.	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice.2011 · DOI: 10.1111/j.1365-313x.2010.04477.x Plant hormone jasmonate prioritizes defense over growth by interfering with gibberellin signaling cascade.2012 · DOI: 10.1073/pnas.1201616109 silencing COI1 in rice increases susceptibility to chewing insects and impairs inducible defense.2012 · DOI: 10.1371/journal.pone.0036214 Oryza sativa COI homologues restore jasmonate signal transduction in Arabidopsis coi1-1 mutants.2013 · DOI: 10.1371/journal.pone.0052802 Priming of jasmonate-mediated antiherbivore defense responses in rice by silicon.2013 · DOI: 10.1073/pnas.1305848110
`UniProt: A2WX30`	Involved in jasmonate (JA) signaling.	No verified direct reference in this release
`Os03g0265500`	Involved in jasmonate (JA) signaling.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0002213	defense response to insect	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=59.233; coverage=97.619; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009611	response to wounding	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009625	response to insect	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009641	shade avoidance	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009753	response to jasmonic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009861	jasmonic acid and ethylene-dependent systemic resistance	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009867	jasmonic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IMP:ComplexPortal	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009901	anther dehiscence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IMP:CACAO	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009909	regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010118	stomatal movement	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010218	response to far red light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016567	protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031348	negative regulation of defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042742	defense response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048364	root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048443	stamen development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050832	defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0106167	extracellular ATP signaling	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000022	regulation of jasmonic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.0; coverage=98.639; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019005	SCF ubiquitin ligase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G39940	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.081; coverage=96.769; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0853400	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=59.233; coverage=97.619; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0265500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.465; coverage=97.959; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os05g0449500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.0; coverage=98.639; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release