Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_012252 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:9111459-9112519 (+) |
| Description | Similar to CLC2: Clathrin light chain 2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_012252 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 18 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g40060 |
Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. | No verified direct reference in this release |
At3g51890 |
Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. | No verified direct reference in this release |
At2g20760 |
Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os04g0679100 |
Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. | No verified direct reference in this release |
Os06g0731800 |
Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006886 | intracellular protein transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.753; coverage=74.699; evalue=5.02e-63; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071280 | cellular response to copper ion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.526; coverage=61.044; evalue=1.41e-50; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072583 | clathrin-dependent endocytosis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.753; coverage=74.699; evalue=5.02e-63; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.526; coverage=61.044; evalue=1.41e-50; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.753; coverage=74.699; evalue=5.02e-63; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.526; coverage=61.044; evalue=1.41e-50; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.753; coverage=74.699; evalue=5.02e-63; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.394; coverage=66.265; evalue=3.08e-59; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.753; coverage=74.699; evalue=5.02e-63; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009504 | cell plate | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.753; coverage=74.699; evalue=5.02e-63; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009524 | phragmoplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.753; coverage=74.699; evalue=5.02e-63; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009941 | chloroplast envelope | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.753; coverage=74.699; evalue=5.02e-63; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030125 | clathrin vesicle coat | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.753; coverage=74.699; evalue=5.02e-63; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030130 | clathrin coat of trans-Golgi network vesicle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.753; coverage=74.699; evalue=5.02e-63; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030132 | clathrin coat of coated pit | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.753; coverage=74.699; evalue=5.02e-63; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005198 | structural molecule activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.753; coverage=74.699; evalue=5.02e-63; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032050 | clathrin heavy chain binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.753; coverage=74.699; evalue=5.02e-63; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.753; coverage=74.699; evalue=5.02e-63; UniProt GO evidence=IPI:IntAct | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G20760 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.526; coverage=61.044; evalue=1.41e-50 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G40060 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.753; coverage=74.699; evalue=5.02e-63 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G51890 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.394; coverage=66.265; evalue=3.08e-59 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os04g0679100 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=59.477; coverage=61.446; evalue=6.14e-51 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os06g0731800 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=54.144; coverage=72.691; evalue=6.99e-49 | UniProtKB/Swiss-Prot DAT 2026 current_release |