Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_012237`
Query reference	OH1004
Location	Chr03:8923914-8927762 (-)
Description	Similar to NFXL2: NF-X1-type zinc finger protein NFXL2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_012237 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 24 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g05660`	Probable transcriptional regulator.	The AtNFXL1 gene encodes a NF-X1 type zinc finger protein required for growth under salt stress.2006 · DOI: 10.1016/j.febslet.2006.07.079 NFX1-LIKE2 (NFXL2) suppresses abscisic acid accumulation and stomatal closure in Arabidopsis thaliana.2011 · DOI: 10.1371/journal.pone.0026982 NFXL2 modifies cuticle properties in Arabidopsis.2012 · DOI: 10.4161/psb.19838
`At1g10170`	Mediates E2-dependent ubiquitination (By similarity).	The AtNFXL1 gene encodes a NF-X1 type zinc finger protein required for growth under salt stress.2006 · DOI: 10.1016/j.febslet.2006.07.079 AtNFXL1, an Arabidopsis homologue of the human transcription factor NF-X1, functions as a negative regulator of the trichothecene phytotoxin-induced defense response.2008 · DOI: 10.1111/j.1365-313x.2007.03353.x The AtNFXL1 gene functions as a signaling component of the type A trichothecene-dependent response.2008 · DOI: 10.4161/psb.6291

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000122	negative regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.283; coverage=77.921; evalue=4.42e-79; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.283; coverage=77.921; evalue=4.42e-79; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007623	circadian rhythm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009651	response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010310	regulation of hydrogen peroxide metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016567	protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051865	protein autoubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.283; coverage=77.921; evalue=4.42e-79; UniProt GO evidence=ISS:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0160062	cutin-based cuticle development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000037	regulation of stomatal complex patterning	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000785	chromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.678; coverage=83.528; evalue=9.67e-160; UniProt GO evidence=ISA:NTNU_SB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016020	membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000987	cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.283; coverage=77.921; evalue=4.42e-79; UniProt GO evidence=ISS:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.283; coverage=77.921; evalue=4.42e-79; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016740	transferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0061630	ubiquitin protein ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.283; coverage=77.921; evalue=4.42e-79; UniProt GO evidence=ISS:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G05660	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.804; coverage=98.248; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dme:Dmel_CG3647	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.283; coverage=77.921; evalue=4.42e-79	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	hsa:152518	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.678; coverage=83.528; evalue=9.67e-160	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	xla:779353	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.509; coverage=95.561; evalue=3.32e-167	UniProtKB/Swiss-Prot DAT 2026 current_release