Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_012167`
Query reference	OH1004
Location	Chr03:7650900-7652528 (-)
Description	Similar to LSF2: Phosphoglucan phosphatase LSF2%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_012167 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 28 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10940`	Starch-associated phosphoglucan phosphatase that selectively dephosphorylates the glucan C3 position.	The phosphoglucan phosphatase like sex Four2 dephosphorylates starch at the C3-position in Arabidopsis.2011 · DOI: 10.1105/tpc.111.092155 Structure of the Arabidopsis glucan phosphatase like sex four2 reveals a unique mechanism for starch dephosphorylation.2013 · DOI: 10.1105/tpc.113.112706
`At3g52180`	Starch granule-associated phosphoglucan phosphatase involved in the control of starch accumulation.	Similar protein phosphatases control starch metabolism in plants and glycogen metabolism in mammals.2006 · DOI: 10.1074/jbc.m600519200 A chloroplast-localized dual-specificity protein phosphatase in Arabidopsis contains a phylogenetically dispersed and ancient carbohydrate-binding domain, which binds the polysaccharide starch.2006 · DOI: 10.1111/j.1365-313x.2006.02704.x STARCH-EXCESS4 is a laforin-like Phosphoglucan phosphatase required for starch degradation in Arabidopsis thaliana.2009 · DOI: 10.1105/tpc.108.064360 The Laforin-like dual-specificity phosphatase SEX4 from Arabidopsis hydrolyzes both C6- and C3-phosphate esters introduced by starch-related dikinases and thereby affects phase transition of alpha-glucans.2010 · DOI: 10.1104/pp.109.149914 The phosphoglucan phosphatase like sex Four2 dephosphorylates starch at the C3-position in Arabidopsis.2011 · DOI: 10.1105/tpc.111.092155 Engineering starch accumulation by manipulation of phosphate metabolism of starch.2012 · DOI: 10.1111/j.1467-7652.2012.00684.x Phosphoglucan-bound structure of starch phosphatase Starch Excess4 reveals the mechanism for C6 specificity.2014 · DOI: 10.1073/pnas.1400757111
`At3g01510`	Starch granule-associated phosphoglucan phosphatase involved in the control of starch accumulation.	A putative phosphatase, LSF1, is required for normal starch turnover in Arabidopsis leaves.2010 · DOI: 10.1104/pp.109.148981

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0005977	glycogen metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.904; coverage=68.166; evalue=9.58e-12; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005978	glycogen biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.904; coverage=68.166; evalue=9.58e-12; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005982	starch metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.294; coverage=69.55; evalue=1.1e-42; UniProt GO evidence=IMP:CACAO	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005983	starch catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.806; coverage=89.273; evalue=3.46e-140; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006914	autophagy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.904; coverage=68.166; evalue=9.58e-12; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009892	negative regulation of metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.904; coverage=68.166; evalue=9.58e-12; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016311	dephosphorylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.904; coverage=68.166; evalue=9.58e-12; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.857; coverage=67.82; evalue=2.43e-42; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.806; coverage=89.273; evalue=3.46e-140; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.904; coverage=68.166; evalue=9.58e-12; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.904; coverage=68.166; evalue=9.58e-12; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009501	amyloplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.857; coverage=67.82; evalue=2.43e-42; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.806; coverage=89.273; evalue=3.46e-140; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009569	chloroplast starch grain	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.503; coverage=64.706; evalue=1.04e-28; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.294; coverage=69.55; evalue=1.1e-42; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043036	starch grain	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.503; coverage=64.706; evalue=1.04e-28; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0098556	cytoplasmic side of rough endoplasmic reticulum membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.904; coverage=68.166; evalue=9.58e-12; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004721	phosphoprotein phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.806; coverage=89.273; evalue=3.46e-140; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004722	protein serine/threonine phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.904; coverage=68.166; evalue=9.58e-12; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004725	protein tyrosine phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.904; coverage=68.166; evalue=9.58e-12; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019203	carbohydrate phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.806; coverage=89.273; evalue=3.46e-140; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030246	carbohydrate binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.904; coverage=68.166; evalue=9.58e-12; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030247	polysaccharide binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.294; coverage=69.55; evalue=1.1e-42; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042802	identical protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.904; coverage=68.166; evalue=9.58e-12; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050308	sugar-phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.806; coverage=89.273; evalue=3.46e-140; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2001066	amylopectin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.294; coverage=69.55; evalue=1.1e-42; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2001069	glycogen binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.904; coverage=68.166; evalue=9.58e-12; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2001070	starch binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.806; coverage=89.273; evalue=3.46e-140; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G01510	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.503; coverage=64.706; evalue=1.04e-28	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G10940	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.806; coverage=89.273; evalue=3.46e-140	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G52180	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.294; coverage=69.55; evalue=1.1e-42	UniProtKB/Swiss-Prot DAT 2026 current_release