Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_012098 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:6315426-6316456 (-) |
| Description | Similar to LIL3.1: Light-harvesting complex-like protein 3 isotype 1%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_012098 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 17 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g17600 |
Light-harvesting-like protein required for biosynthesis of phytylated chlorophylls and alpha-tocopherol in green seedlings. | No verified direct reference in this release |
At5g47110 |
Light-harvesting-like protein required for biosynthesis of phytylated chlorophylls and alpha-tocopherol in green seedlings. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.404; coverage=80.753; evalue=2.77e-69; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015979 | photosynthesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.404; coverage=80.753; evalue=2.77e-69; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902326 | positive regulation of chlorophyll biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.404; coverage=80.753; evalue=2.77e-69; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904964 | positive regulation of phytol biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.404; coverage=80.753; evalue=2.77e-69; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904966 | positive regulation of vitamin E biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.404; coverage=80.753; evalue=2.77e-69; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.404; coverage=80.753; evalue=2.77e-69; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009503 | thylakoid light-harvesting complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.404; coverage=80.753; evalue=2.77e-69; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.404; coverage=80.753; evalue=2.77e-69; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009523 | photosystem II | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.404; coverage=80.753; evalue=2.77e-69; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009535 | chloroplast thylakoid membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.404; coverage=80.753; evalue=2.77e-69; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.933; coverage=74.477; evalue=3.04e-64; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042651 | thylakoid membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.404; coverage=80.753; evalue=2.77e-69; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003700 | DNA-binding transcription factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.404; coverage=80.753; evalue=2.77e-69; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016168 | chlorophyll binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.404; coverage=80.753; evalue=2.77e-69; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019899 | enzyme binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.404; coverage=80.753; evalue=2.77e-69; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.404; coverage=80.753; evalue=2.77e-69; UniProt GO evidence=IPI:IntAct | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043495 | protein-membrane adaptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.404; coverage=80.753; evalue=2.77e-69; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G17600 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.404; coverage=80.753; evalue=2.77e-69 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G47110 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.933; coverage=74.477; evalue=3.04e-64 | UniProtKB/Swiss-Prot DAT 2026 current_release |