Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_011773`
Query reference	OH1004
Location	Chr03:14149-19121 (+)
Description	Similar to 4-coumarate--CoA ligase 2 (Glycine max OX%3D3847)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_011773 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 10 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g65060`	Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.	Three 4-coumarate:coenzyme A ligases in Arabidopsis thaliana represent two evolutionarily divergent classes in angiosperms.1999 · DOI: 10.1046/j.1365-313x.1999.00491.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0697400`	Involved in the phenylpropanoid metabolism by mediating the activation of a number of hydroxycinnamates for the biosynthesis of monolignols and other phenolic secondary metabolites.	Functional characterization of evolutionarily divergent 4-coumarate:coenzyme a ligases in rice.2011 · DOI: 10.1104/pp.111.178301 Analysis of five rice 4-coumarate:coenzyme A ligase enzyme activity and stress response for potential roles in lignin and flavonoid biosynthesis in rice.2013 · DOI: 10.1016/j.bbrc.2012.12.019

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009411	response to UV	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.963; coverage=91.767; evalue=0.0; UniProt GO evidence=IEP:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009698	phenylpropanoid metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.752; coverage=91.252; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010584	pollen exine formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.963; coverage=91.767; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.963; coverage=91.767; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.752; coverage=91.252; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016207	4-coumarate-CoA ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.752; coverage=91.252; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016405	CoA-ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.731; coverage=92.967; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050563	trans-feruloyl-CoA synthase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.963; coverage=91.767; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0106286	(E)-caffeate-CoA ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.963; coverage=91.767; evalue=0.0; UniProt GO evidence=IEA:RHEA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0106290	trans-cinnamate-CoA ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.963; coverage=91.767; evalue=0.0; UniProt GO evidence=IEA:EnsemblPlants	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G65060	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.963; coverage=91.767; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os02g0697400	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.392; coverage=92.796; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	gmx:547930	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.752; coverage=91.252; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	nta:107803673	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.731; coverage=92.967; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release