Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_010604`
Query reference	OH1004
Location	Chr02:149589023-149592208 (+)
Description	Similar to NMAT2: Nuclear intron maturase 2%2C mitochondrial (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_010604 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 18 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g46920`	Nuclear-encoded maturase required for splicing of group-II introns in mitochondria.	AtnMat2, a nuclear-encoded maturase required for splicing of group-II introns in Arabidopsis mitochondria.2009 · DOI: 10.1261/rna.1776409 nMAT1, a nuclear-encoded maturase involved in the trans-splicing of nad1 intron 1, is essential for mitochondrial complex I assembly and function.2012 · DOI: 10.1111/j.1365-313x.2012.04998.x
`At1g30010`	Nuclear-encoded maturase required for splicing of group-II introns in mitochondria.	A mutation in At-nMat1a, which encodes a nuclear gene having high similarity to group II intron maturase, causes impaired splicing of mitochondrial NAD4 transcript and altered carbon metabolism in Arabidopsis thaliana.2006 · DOI: 10.1093/pcp/pcj051 nMAT1, a nuclear-encoded maturase involved in the trans-splicing of nad1 intron 1, is essential for mitochondrial complex I assembly and function.2012 · DOI: 10.1111/j.1365-313x.2012.04998.x

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000373	Group II intron splicing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.64; coverage=92.533; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000374	Group III intron splicing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.824; coverage=87.333; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006314	intron homing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.64; coverage=92.533; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006397	mRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.813; coverage=69.733; evalue=6.82e-41; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006521	regulation of amino acid metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.824; coverage=87.333; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007005	mitochondrion organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.64; coverage=92.533; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009845	seed germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.824; coverage=87.333; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010228	vegetative to reproductive phase transition of meristem	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.824; coverage=87.333; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010896	regulation of triglyceride catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.824; coverage=87.333; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032885	regulation of polysaccharide biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.824; coverage=87.333; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090351	seedling development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.824; coverage=87.333; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090615	mitochondrial mRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.64; coverage=92.533; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2001006	regulation of cellulose biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.824; coverage=87.333; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.64; coverage=92.533; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.64; coverage=92.533; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003964	RNA-directed DNA polymerase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.905; coverage=73.067; evalue=7.92e-26; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004519	endonuclease activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.64; coverage=92.533; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016787	hydrolase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.64; coverage=92.533; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G30010	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.824; coverage=87.333; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G46920	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.64; coverage=92.533; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	llm:llmg_1371	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.905; coverage=73.067; evalue=7.92e-26	UniProtKB/Swiss-Prot DAT 2026 current_release