Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene ID	`LXL04_010445`
Query reference	OH1004
Location	Chr02:146671071-146676227 (-)
Description	Similar to HUB1: E3 ubiquitin-protein ligase BRE1-like 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_010445 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 22 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q8RXD6`	E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0550400`	E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1.	Histone H2B Monoubiquitination Mediated by HISTONE MONOUBIQUITINATION1 and HISTONE MONOUBIQUITINATION2 Is Involved in Anther Development by Regulating Tapetum Degradation-Related Genes in Rice.2015 · DOI: 10.1104/pp.114.256578
`UniProt: A2XW69`	E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1.	No verified direct reference in this release
`Os10g0565600`	E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1.	Histone H2B Monoubiquitination Mediated by HISTONE MONOUBIQUITINATION1 and HISTONE MONOUBIQUITINATION2 Is Involved in Anther Development by Regulating Tapetum Degradation-Related Genes in Rice.2015 · DOI: 10.1104/pp.114.256578 Flowering-Related RING Protein 1 (FRRP1) Regulates Flowering Time and Yield Potential by Affecting Histone H2B Monoubiquitination in Rice (Oryza Sativa).2016 · DOI: 10.1371/journal.pone.0150458
`UniProt: A2ZAC2`	E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006325	chromatin organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.876; coverage=100.797; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006513	protein monoubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.876; coverage=100.797; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009965	leaf morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010162	seed dormancy process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010228	vegetative to reproductive phase transition of meristem	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010389	regulation of G2/M transition of mitotic cell cycle	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016567	protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.876; coverage=100.797; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045087	innate immune response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050832	defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051301	cell division	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051781	positive regulation of cell division	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0033503	HULC complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004842	ubiquitin-protein transferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042802	identical protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IPI:IntAct	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042803	protein homodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0061630	ubiquitin protein ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140852	histone ubiquitin ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140936	histone H2B deubiquitinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G44950	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.322; coverage=100.569; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os04g0550400	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.876; coverage=100.797; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os10g0565600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.118; coverage=96.811; evalue=1.93e-135	UniProtKB/Swiss-Prot DAT 2026 current_release