Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_009944`
Query reference	OH1004
Location	Chr02:136496476-136500213 (+)
Description	Similar to WAVH2: Probable E3 ubiquitin-protein ligase WAVH2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_009944 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 10 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g65683`	Probable E3 ubiquitin-protein ligase involved in the regulation of root growth.	The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots.2012 · DOI: 10.1111/j.1365-313x.2011.04870.x
`At2g22680`	E3 ubiquitin-protein ligase involved in the regulation of root growth.	The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots.2012 · DOI: 10.1111/j.1365-313x.2011.04870.x
`At4g37890`	Probable E3 ubiquitin-protein ligase involved in female gametophyte development.	No verified direct reference in this release
`At5g49665`	E3 ubiquitin-protein ligase involved in the regulation of root growth.	The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots.2012 · DOI: 10.1111/j.1365-313x.2011.04870.x

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009630	gravitropism	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.79; coverage=68.404; evalue=1.2e-26; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010197	polar nucleus fusion	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.754; coverage=68.088; evalue=5.8e-18; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010274	hydrotropism	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.05; coverage=34.597; evalue=9.04e-16; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016567	protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.131; coverage=62.875; evalue=4.93e-22; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048364	root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.79; coverage=68.404; evalue=1.2e-26; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005576	extracellular region	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.131; coverage=62.875; evalue=4.93e-22; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.79; coverage=68.404; evalue=1.2e-26; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009506	plasmodesma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.754; coverage=68.088; evalue=5.8e-18; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.79; coverage=68.404; evalue=1.2e-26; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0061630	ubiquitin protein ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.79; coverage=68.404; evalue=1.2e-26; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G22680	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.131; coverage=62.875; evalue=4.93e-22	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G37890	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.754; coverage=68.088; evalue=5.8e-18	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G49665	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.05; coverage=34.597; evalue=9.04e-16	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G65683	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.79; coverage=68.404; evalue=1.2e-26	UniProtKB/Swiss-Prot DAT 2026 current_release