RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene IDLXL04_009854
Query referenceOH1004
LocationChr02:135000705-135011699 (+)
DescriptionSimilar to SKI2: DExH-box ATP-dependent RNA helicase DExH11 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_009854 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 26 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g46960 Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1 complex (PAF1C).
A DExD/H box RNA helicase is important for K+ deprivation responses and tolerance in Arabidopsis thaliana.2011 · DOI: 10.1111/j.1742-4658.2011.08147.x
Context-dependent dual role of SKI8 homologs in mRNA synthesis and turnover.2012 · DOI: 10.1371/journal.pgen.1002652

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000292RNA fragment catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.265; coverage=35.718; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000956nuclear-transcribed mRNA catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.531; coverage=29.932; evalue=3.24e-138; UniProt GO evidence=IDA:ComplexPortalUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.265; coverage=35.718; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006402mRNA catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.531; coverage=29.932; evalue=3.24e-138; UniProt GO evidence=IDA:ComplexPortalUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006417regulation of translationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.531; coverage=29.932; evalue=3.24e-138; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006813potassium ion transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.265; coverage=35.718; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016441post-transcriptional gene silencingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.265; coverage=35.718; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030968endoplasmic reticulum unfolded protein responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.405; coverage=20.228; evalue=1.81e-141; UniProt GO evidence=IMP:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035864response to potassium ionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.265; coverage=35.718; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051607defense response to virusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.531; coverage=29.932; evalue=3.24e-138; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070478nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.265; coverage=35.718; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070481nuclear-transcribed mRNA catabolic process, non-stop decayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.405; coverage=20.228; evalue=1.81e-141; UniProt GO evidence=ISO:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1904278positive regulation of wax biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.265; coverage=35.718; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990074polyuridylation-dependent mRNA catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.405; coverage=20.228; evalue=1.81e-141; UniProt GO evidence=IGI:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000325plant-type vacuoleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.265; coverage=35.718; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.265; coverage=35.718; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.405; coverage=20.228; evalue=1.81e-141; UniProt GO evidence=ISO:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.265; coverage=35.718; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.405; coverage=20.228; evalue=1.81e-141; UniProt GO evidence=HDA:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0055087Ski complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.265; coverage=35.718; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.531; coverage=29.932; evalue=3.24e-138; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.265; coverage=35.718; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003724RNA helicase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.265; coverage=35.718; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.531; coverage=29.932; evalue=3.24e-138; UniProt GO evidence=HDA:SGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.265; coverage=35.718; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016887ATP hydrolysis activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.265; coverage=35.718; evalue=0.0; UniProt GO evidence=IEA:RHEAUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G46960KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.265; coverage=35.718; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsce:YLR398CKEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.531; coverage=29.932; evalue=3.24e-138UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGspo:2538841KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.405; coverage=20.228; evalue=1.81e-141UniProtKB/Swiss-Prot DAT 2026 current_release